View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17844_low_30 (Length: 369)
Name: NF17844_low_30
Description: NF17844
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17844_low_30 |
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Alignment Details
Target: chr1 (Bit Score: 256; Significance: 1e-142; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 256; E-Value: 1e-142
Query Start/End: Original strand, 75 - 338
Target Start/End: Complemental strand, 29661171 - 29660908
Alignment:
| Q |
75 |
aggaaatataaggacttcagttgatacacattatcttgtagtcttaaagagtccctaggctttacccaagagtcaagactacaaaagaactgatatacga |
174 |
Q |
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| T |
29661171 |
aggaaatataaggacttcagttgatacacattatcttgtagtcttaaagagtccctaggctttacccaagagtcaagactacaaaagaactgatatacga |
29661072 |
T |
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| Q |
175 |
agaatgctgttacaactcatttaagagataagaaaccagcaaagagtctcaaagtggatcacaaatcgaaggacattatgtgtggtcaatgaatttatag |
274 |
Q |
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| T |
29661071 |
agaatgttgttacaactcatttaagagataagaaaccagcaaagagtctcaaagtggatcacaaatcgaaggacattatgtgtggtcaatgaatttatag |
29660972 |
T |
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| Q |
275 |
atggagatttggatccatgaagcaggtggtagaaattggactgcactacacgaatgaatatact |
338 |
Q |
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| T |
29660971 |
atggagatttggatccatgaagcaggtggtagaaattggactgcactacatgaatgaatatact |
29660908 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 38
Target Start/End: Complemental strand, 29661225 - 29661188
Alignment:
| Q |
1 |
atctcttgtgttctgctaaatagcgtatattatcctac |
38 |
Q |
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| T |
29661225 |
atctcttgtgttctgccaaatagcatatattatcctac |
29661188 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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