View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF17844_low_31 (Length: 367)
Name: NF17844_low_31
Description: NF17844
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17844_low_31 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 270; Significance: 1e-151; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 270; E-Value: 1e-151
Query Start/End: Original strand, 15 - 359
Target Start/End: Original strand, 31942873 - 31943218
Alignment:
| Q |
15 |
aatatgtatatttgtcaaataaatgagaagatatatcaaagagaagaacatcaaaataa-aaaattaaactttaccttgtatatgaggcgttggccaaaa |
113 |
Q |
| |
|
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||| ||| |||||||||||||||||||||||||||||| |
|
|
| T |
31942873 |
aatatgtatatttgtcaaatagatgagaagatatatcaaagagaagaacatcaaaataagaaaataaaattttaccttgtatatgaggcgttggccaaaa |
31942972 |
T |
|
| Q |
114 |
gtgttgcaccaaattattttcaggaactaaatggttattaccgttattcaccataattgattgactgaacctgctccatgaattaccaagttgtcctact |
213 |
Q |
| |
|
||||||||||||||| |||||||||||||||||| |||||||||||||||||||||||||||||| | ||| ||||||||||||||||||||||||||| |
|
|
| T |
31942973 |
gtgttgcaccaaattgttttcaggaactaaatggctattaccgttattcaccataattgattgaccgggccttctccatgaattaccaagttgtcctact |
31943072 |
T |
|
| Q |
214 |
tgatccagcaaatgaatttgagataacaatgttgcattatccctcatagcaatcccattagaagaacttgccaatgtattaggagattggtgatttcctc |
313 |
Q |
| |
|
||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||| |
|
|
| T |
31943073 |
tgatcgagcaagtgaatttgagataacaatgttgcattatccctcatagcaatcccattaaaagaacttgccaatgtactaggagattggtgatttcctc |
31943172 |
T |
|
| Q |
314 |
taatccttttgggtggacctctgccatcatccatggagcctatgct |
359 |
Q |
| |
|
|||||||||||||||||||||| ||| |||||||||| ||||||| |
|
|
| T |
31943173 |
taatccttttgggtggacctctaccagaatccatggagtctatgct |
31943218 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 98; E-Value: 3e-48
Query Start/End: Original strand, 85 - 347
Target Start/End: Original strand, 31952125 - 31952399
Alignment:
| Q |
85 |
ttaccttgtatatgaggcgttggccaaaagtgttgcaccaaattattttcaggaactaaatggttattaccgttattcaccataattgattgactgaacc |
184 |
Q |
| |
|
||||||||||||||| | ||||| |||||||||||||||||| |||||||||| |||||| ||||| | ||||||||||||| || ||| | |
|
|
| T |
31952125 |
ttaccttgtatatgaagtgttggttgaaagtgttgcaccaaattgttttcaggaattaaatgattattttcattattcaccataagagaccgacctggtc |
31952224 |
T |
|
| Q |
185 |
tgctccatgaattaccaagttgtcctacttgatccagcaaatgaatttgagataacaatgttgcattatccctcatagcaatcccattag---------- |
274 |
Q |
| |
|
| ||||||||||||||||||||| ||||||||| |||||||||||||||||| ||||||| ||||| ||| |||||||| | | |||| |
|
|
| T |
31952225 |
tactccatgaattaccaagttgttctacttgattgagcaaatgaatttgagatggcaatgttacattaccccccatagcaacctcgttagggggagaaat |
31952324 |
T |
|
| Q |
275 |
--aagaacttgccaatgtattaggagattggtgatttcctctaatccttttgggtggacctctgccatcatccat |
347 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||| |
|
|
| T |
31952325 |
agaagaacttgccaatgtattaggagattggtgatttcctctaattcttttgggtggacctctaccatcatccat |
31952399 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University