View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF17844_low_32 (Length: 360)
Name: NF17844_low_32
Description: NF17844
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17844_low_32 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 226; Significance: 1e-124; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 226; E-Value: 1e-124
Query Start/End: Original strand, 24 - 349
Target Start/End: Original strand, 49669681 - 49670006
Alignment:
| Q |
24 |
gtgttgattttatcagcaaggtatggaagtggggaccaatataactgtccacactcattcagttgtggagctcgtgggattttccgttatcctttcacca |
123 |
Q |
| |
|
|||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||| |
|
|
| T |
49669681 |
gtgttgattttatcagcaaggtatggaaatgggaaccaatataactgtccacactcattcagttgtggagctcgtgggattttccattaccctttcacca |
49669780 |
T |
|
| Q |
124 |
aggcagaacaaccagactgtggctccatactcatacatggctgtgacgacacctattattcacccaaaatgattcaactggagaagaatgcnnnnnnnnt |
223 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| ||||||||| |||| |||||||||||||||||||| |||||||| |||||||| | |
|
|
| T |
49669781 |
aggcagaacaaccagactgtggctccatactcatacgtggctgtgatgacagttattattcacccaaaatgatccaactggacaagaatgcaaaaccaat |
49669880 |
T |
|
| Q |
224 |
tgagctaactggtgtcattgaccacaataccattacactttctgatcaagaattttacaaacgtttgcaagataatgtttgtaatactttgaaccaaaat |
323 |
Q |
| |
|
|||||||||||||||| ||||||| | |||||||||||||||||||||||| ||||||||||||||||||||||||| |||| ||||||||||||| ||| |
|
|
| T |
49669881 |
tgagctaactggtgtcgttgaccagagtaccattacactttctgatcaagatttttacaaacgtttgcaagataatgcttgtgatactttgaaccacaat |
49669980 |
T |
|
| Q |
324 |
tacactcttccttctccttctccttt |
349 |
Q |
| |
|
|||||||||||| | ||||||||||| |
|
|
| T |
49669981 |
tacactcttcctcccccttctccttt |
49670006 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University