View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17844_low_33 (Length: 350)
Name: NF17844_low_33
Description: NF17844
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17844_low_33 |
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Alignment Details
Target: chr1 (Bit Score: 249; Significance: 1e-138; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 249; E-Value: 1e-138
Query Start/End: Original strand, 18 - 314
Target Start/End: Original strand, 26277928 - 26278223
Alignment:
| Q |
18 |
gttcaaatatagcaaacatagttatttaattgttctttagacacttatgacacatgcacatcaaactattcaaaatacctcctacaacaattaattattg |
117 |
Q |
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| T |
26277928 |
gttcaaatatagcaaacatagttatttaattgttctttagacacttatgacacatgcacatcaaactattcgaaatacctcctacaataattaattattg |
26278027 |
T |
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| Q |
118 |
tttgacaaactttttaaactaattacaccgatttaaaaaataatttaatcaacttaaaaagtagttgaacggaaattaactaccattttaaagcaaacga |
217 |
Q |
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||||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26278028 |
tttgacaaactttataa-ctaattacaccgatttaaaaaataatttaatcaacttaaaaagtagttgaacggaaattaactaccattttaaagcaaacga |
26278126 |
T |
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| Q |
218 |
tagttaattacctatgtgggtttaggttaaaaagaaacgttgcttgaataatagcgcccgcatgtagagagtgattgctattcgtcgatactaagtt |
314 |
Q |
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|| ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||| ||||| |||| ||||||| |
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| T |
26278127 |
gagctaattacctatgtgggtttaggttaaaaagaaatgttgcttgaataatagcgcccgcatggagagagtgattgcgattcgacgatgctaagtt |
26278223 |
T |
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