View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17844_low_36 (Length: 327)
Name: NF17844_low_36
Description: NF17844
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17844_low_36 |
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Alignment Details
Target: chr8 (Bit Score: 248; Significance: 1e-138; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 248; E-Value: 1e-138
Query Start/End: Original strand, 1 - 316
Target Start/End: Original strand, 39380512 - 39380813
Alignment:
| Q |
1 |
ggaacgtaaagatgatgatttgggtgtgttgttgaattgaaagaagctccaatatgtgtgaatctacaaatcgcgaaaacgaaagaatggtggaaaacga |
100 |
Q |
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| T |
39380512 |
ggaaagtaaagatgaagatttgggtgtgttgttgaattgaaagaagctccaatctgtgtgaatctacaaatcgcgaaaacgaaagaatggtggaaaacga |
39380611 |
T |
|
| Q |
101 |
cagcgtaacggagaagaaaccgagaattcgtccaatcgtgcgtttagggttttttctaatatctcacagtaactatgtcaggtacttagatacactcttc |
200 |
Q |
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| T |
39380612 |
cagcgtaacggagaagaaaccgagaattcgtccaatcgtgcgtttagggttttttctaatatctcacagtaactatgtcaggtacttagatacactcttc |
39380711 |
T |
|
| Q |
201 |
atctgaatctgaatctgaatctgaatttggagaatgaatgaataactgtgttggttggttattttcagcttgctttgtttcttatctggaatcgttgctc |
300 |
Q |
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| T |
39380712 |
------------atctgaatctgaatttggagaat--aagaataactgtgttggttggttattttcagcttgctttgtttcttatctggaatcgttgctc |
39380797 |
T |
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| Q |
301 |
ttcttctccttcctat |
316 |
Q |
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|||||||||||||||| |
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| T |
39380798 |
ttcttctccttcctat |
39380813 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 49; Significance: 5e-19; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 210 - 307
Target Start/End: Original strand, 18500749 - 18500847
Alignment:
| Q |
210 |
tgaatctgaatctgaatttggagaatgaatgaataact--gtgttggttggttattttcagcttgctttgtttcttatctggaatcgttgctcttcttct |
307 |
Q |
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| T |
18500749 |
tgaatttgaatttgaatttggagaatggatgaataactatgtgttggtttgtt-ttttcagcttgctttgttttgtatcaggaatcgttggtcttcttct |
18500847 |
T |
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