View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17844_low_4 (Length: 587)
Name: NF17844_low_4
Description: NF17844
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17844_low_4 |
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Alignment Details
Target: chr1 (Bit Score: 490; Significance: 0; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 490; E-Value: 0
Query Start/End: Original strand, 5 - 571
Target Start/End: Complemental strand, 46438921 - 46438355
Alignment:
| Q |
5 |
ttagatgatggatatgtgaaagtaggtactaataaaagggttttaatatcatcatgcnnnnnnnncctttatcgattagtaaattttatgatgaccaagt |
104 |
Q |
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| T |
46438921 |
ttagatgatggatatgtgaaagtaggtactaataaaagggttttaatatcatcatgcttttttttcctttatcgattagtaaattttaagatggccaagt |
46438822 |
T |
|
| Q |
105 |
aaaatccgaaaatagattgcctaaatatattcttctgaaagaaagctnnnnnnntcatcatattcttctgaaatataaaatacattaccagggataggga |
204 |
Q |
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| T |
46438821 |
aaaatccgaaaatagattgcctaaatatattcttctgaaagaaagctaaaaaaatcatcatattcttctgaaatataaaatacagtaccagggataggga |
46438722 |
T |
|
| Q |
205 |
ttatgtcatttccctgatgcagaagccaagctaatgctaattgagaaggagtgcatgcatgctttgaagccaagtcatcgattcgttcatagaaaagatt |
304 |
Q |
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| T |
46438721 |
ttatgtcatttccctgatgcagaagccaagctaatgctaattgagaaggagtgcatgcatgctttgaagccaagtcattgattcgttcataaaaaagctt |
46438622 |
T |
|
| Q |
305 |
gttcttttccaaattttctcctgtgaaccttggatgcatagcctgttacagaaataagaaaaatattcaaaagaaaatcgcttcaggaatggaactaatt |
404 |
Q |
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| T |
46438621 |
gttcttttccaaattttctcctgtgaaccttggatgcatagcctgttacagaaataagaaaaatattcaaaagaaaatcgcgtcaggaatggaactaatt |
46438522 |
T |
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| Q |
405 |
cagtgatatttatgacatttttcctcatcaatgttattttgaccattataataagatattctccaaatttatgcaaacatatataaaactgcattatcat |
504 |
Q |
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| T |
46438521 |
cagtgatatttatgacatttttcctcatcgatgttattttgaccattataataagatattctccaaatttatgcaaacatatataaaactgcattatcat |
46438422 |
T |
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| Q |
505 |
aactagctgcgtaccagcaagctctgactagacaaagcctctaccactgactttcctgcaaaaaagc |
571 |
Q |
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| T |
46438421 |
aactagctgcgtaccagcaagctctgactagacaaagcctctaccactgactttcctgcaaaaaagc |
46438355 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 105; E-Value: 4e-52
Query Start/End: Original strand, 190 - 358
Target Start/End: Complemental strand, 46433094 - 46432926
Alignment:
| Q |
190 |
taccagggatagggattatgtcatttccctgatgcagaagccaagctaatgctaattgagaaggagtgcatgcatgctttgaagccaagtcatcgattcg |
289 |
Q |
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|||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||| ||||| |
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| T |
46433094 |
taccggggatagggattatgtcatttccctgatgcagaagccatgctaatgctaattgagaaggagtgcatgcatgctttgaagccaatacattgattct |
46432995 |
T |
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| Q |
290 |
ttcatagaaaagattgttcttttccaaattttctcctgtgaaccttggatgcatagcctgttacagaaa |
358 |
Q |
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| T |
46432994 |
ttcatagattatcttgttcttttccagatttactccagtgaacctgggatgcatattctgttacagaaa |
46432926 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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