View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17844_low_40 (Length: 289)
Name: NF17844_low_40
Description: NF17844
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17844_low_40 |
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| [»] chr8 (4 HSPs) |
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| [»] scaffold0279 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 235; Significance: 1e-130; HSPs: 4)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 235; E-Value: 1e-130
Query Start/End: Original strand, 17 - 289
Target Start/End: Original strand, 27984199 - 27984473
Alignment:
| Q |
17 |
cattaaaatcgtaatttctaaaacatcgagcttaattttccgcattttactgcaatttaaatgtctgtagtttaacca--atcgaaccacaatttaaagc |
114 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
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| T |
27984199 |
cattaaaatcgtaatttctaaaacatcgagcttaattttccgcattttactgcaatttaaatgtctgtagtttaaccacaatcgaaccacaatttaaagc |
27984298 |
T |
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| Q |
115 |
caaaaacttgaaaaaatgtatgaaagtgtaaaagaaattccaaacttacattgtcaccactgctactaccatatgtataaggcttcaggtccagttcctt |
214 |
Q |
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| T |
27984299 |
caaaaacttgaaaaaatgtatgaaagtgtaaaagaaattccaaacttacattgtcaccactgctactaccacatgtataaggcttcaggtccagttcctt |
27984398 |
T |
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| Q |
215 |
agagaaatcgacatatttgtcaannnnnnnaactgagtctccatcttttagaaaccttttcaaatgaaatgctgc |
289 |
Q |
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| T |
27984399 |
agagaaatcgacatatttatcaatttttttaactgagtctccatcttttagaaaccttttcaaatgaaatgctgc |
27984473 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 235; E-Value: 1e-130
Query Start/End: Original strand, 17 - 289
Target Start/End: Original strand, 28041501 - 28041775
Alignment:
| Q |
17 |
cattaaaatcgtaatttctaaaacatcgagcttaattttccgcattttactgcaatttaaatgtctgtagtttaacca--atcgaaccacaatttaaagc |
114 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
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| T |
28041501 |
cattaaaatcgtaatttctaaaacatcgagcttaattttccgcattttactgcaatttaaatgtctgtagtttaaccacaatcgaaccacaatttaaagc |
28041600 |
T |
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| Q |
115 |
caaaaacttgaaaaaatgtatgaaagtgtaaaagaaattccaaacttacattgtcaccactgctactaccatatgtataaggcttcaggtccagttcctt |
214 |
Q |
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| T |
28041601 |
caaaaacttgaaaaaatgtatgaaagtgtaaaagaaattccaaacttacattgtcaccactgctactaccacatgtataaggcttcaggtccagttcctt |
28041700 |
T |
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| Q |
215 |
agagaaatcgacatatttgtcaannnnnnnaactgagtctccatcttttagaaaccttttcaaatgaaatgctgc |
289 |
Q |
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| T |
28041701 |
agagaaatcgacatatttatcaatttttttaactgagtctccatcttttagaaaccttttcaaatgaaatgctgc |
28041775 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 81; E-Value: 4e-38
Query Start/End: Original strand, 17 - 215
Target Start/End: Original strand, 27238787 - 27238972
Alignment:
| Q |
17 |
cattaaaatcgtaatttctaaaacatcgagcttaattttccgcattttactgcaatttaaatgtctgtagtttaaccaatcgaaccacaatttaaagcca |
116 |
Q |
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| T |
27238787 |
cattaaaatcgtaatttctaaaacatctagcttaattttccacattttactggaatttaaatgtctgaagttt---------aaccacaatttaaagcca |
27238877 |
T |
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| Q |
117 |
aaaacttgaaaaaatgtatgaaagtgtaaaagaaattccaaacttacattgtcaccactgctactaccatatgtataaggcttcaggtccagttcctta |
215 |
Q |
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| T |
27238878 |
aacaattgaaaaaatttatgaaagt-tgaaaatgatcccaaacttacattgt---cactgctactaccagatgtataaggattcaggttcagtttctta |
27238972 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 252 - 289
Target Start/End: Original strand, 27239009 - 27239046
Alignment:
| Q |
252 |
tctccatcttttagaaaccttttcaaatgaaatgctgc |
289 |
Q |
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| T |
27239009 |
tctccatcttttagaaaccttttcaaatgaaatactgc |
27239046 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 45; Significance: 1e-16; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 111 - 163
Target Start/End: Original strand, 46234043 - 46234095
Alignment:
| Q |
111 |
aagccaaaaacttgaaaaaatgtatgaaagtgtaaaagaaattccaaacttac |
163 |
Q |
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| T |
46234043 |
aagcccaaaacttgaaaaaatgtatgaaagtgtaaaataaattccaaacttac |
46234095 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0279 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: scaffold0279
Description:
Target: scaffold0279; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 125 - 171
Target Start/End: Original strand, 14992 - 15038
Alignment:
| Q |
125 |
aaaaaatgtatgaaagtgtaaaagaaattccaaacttacattgtcac |
171 |
Q |
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| T |
14992 |
aaaaaaagtatgaaagtgtaaaatgaactccaaacttacattgtcac |
15038 |
T |
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