View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17844_low_41 (Length: 284)
Name: NF17844_low_41
Description: NF17844
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17844_low_41 |
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Alignment Details
Target: chr2 (Bit Score: 188; Significance: 1e-102; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 188; E-Value: 1e-102
Query Start/End: Original strand, 15 - 266
Target Start/End: Complemental strand, 44067283 - 44067030
Alignment:
| Q |
15 |
cataggtgaatctcaatacttttatagaatgtgagaatcattgctccactaattcccaataatgttccaactatcttggccttccctgttaatgttccaa |
114 |
Q |
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| T |
44067283 |
cataggtgaatctcaatacttttatagaatgtgagaatcattgctccactaattcccaataatgttccaactatcttggccttccctgttaatgttccaa |
44067184 |
T |
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| Q |
115 |
tgttcaatctttccaatctga--nnnnnnnnnacaaaaatagtaataagagttgggnnnnnnnntctcgacatcaaaattattaatgttcaaatacgcgc |
212 |
Q |
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| T |
44067183 |
tgttcaatctttccaatctgaattttttttttacaaaaatagtaataagagttgggaaaaaatatcttgacatcaaaattattaatgttcaaatacgcgc |
44067084 |
T |
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| Q |
213 |
agtgtccattgtattttgcgtatttttaaaatatgtataaagtgtagaagataa |
266 |
Q |
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| T |
44067083 |
agtgtccattgtattttgcgtatttttaaaatatgtataaagtgtagaagataa |
44067030 |
T |
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