View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF17844_low_42 (Length: 283)
Name: NF17844_low_42
Description: NF17844
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17844_low_42 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 248; Significance: 1e-138; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 248; E-Value: 1e-138
Query Start/End: Original strand, 17 - 272
Target Start/End: Complemental strand, 30116009 - 30115754
Alignment:
| Q |
17 |
acctaaaagtttgacaatgttcctgtggttgatctgagataagatgactacttcgttgacaaacgtttctatttggtttctgtcaaggtgttttgacttt |
116 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
30116009 |
acctaaaagtttgacaatgttcctgtggttgatctgagataagatgactacttcgttgacaaacgtttctatttggtttctgtcaaggtgttttgacttt |
30115910 |
T |
|
| Q |
117 |
ttaaccgcgactatggttccatctggtagcattcctttgtacactgtaccatagccgccttgaccaagaaacctactttggttgtagtcatctgttgctc |
216 |
Q |
| |
|
||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
30115909 |
ttaactgcgactatggttccatctggtagcattcctttgtacactgtgccatagccgccttgaccaagaaacctactttggttgtagtcatctgttgctc |
30115810 |
T |
|
| Q |
217 |
tttggagctcctctgctgtaaaaagctttgccatttctccatttccatatgatgat |
272 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
30115809 |
tttggagctcctctgctgtaaaaagctttgccatttctccatttccatatgatgat |
30115754 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 143; E-Value: 4e-75
Query Start/End: Original strand, 18 - 272
Target Start/End: Complemental strand, 30105917 - 30105663
Alignment:
| Q |
18 |
cctaaaagtttgacaatgttcctgtggttgatctgagataagatgactacttcgttgacaaacgtttctatttggtttctgtcaaggtgttttgactttt |
117 |
Q |
| |
|
||||| ||||||||||| ||||||||||||||||| || |||||||| ||||| |||||||| || ||||| ||||| || || || | ||||||||||| |
|
|
| T |
30105917 |
cctaagagtttgacaatattcctgtggttgatctgtgacaagatgaccacttcattgacaaaagtctctatctggttcctttctagttcttttgactttt |
30105818 |
T |
|
| Q |
118 |
taaccgcgactatggttccatctggtagcattcctttgtacactgtaccatagccgccttgaccaagaaacctactttggttgtagtcatctgttgctct |
217 |
Q |
| |
|
|||| || ||||||||||||||||||| ||||||||||||||| || |||||||| |||||||||||||| ||||| ||||||||| |||||||||||| |
|
|
| T |
30105817 |
taactgcaactatggttccatctggtaacattcctttgtacaccgtgccatagccaccttgaccaagaaatctactccggttgtagttatctgttgctct |
30105718 |
T |
|
| Q |
218 |
ttggagctcctctgctgtaaaaagctttgccatttctccatttccatatgatgat |
272 |
Q |
| |
|
||| ||||| ||||| |||||||||||||||||||||||||||||||| |||||| |
|
|
| T |
30105717 |
ttgcagctcttctgccgtaaaaagctttgccatttctccatttccataagatgat |
30105663 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 44 - 136
Target Start/End: Original strand, 30122921 - 30123010
Alignment:
| Q |
44 |
gttgatctgagataagatgactacttcgttgacaaacgtttctatttggtttctgtcaaggtgttttgactttttaaccgcgactatggttcc |
136 |
Q |
| |
|
|||||||||||||||||||| ||||| ||||||| | |||||||||||| |||||||| ||||| ||||||||||| || | ||||||||| |
|
|
| T |
30122921 |
gttgatctgagataagatgaatactt---tgacaaaagcttctatttggttcctgtcaagctgtttcgactttttaactgcaattatggttcc |
30123010 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 195 - 265
Target Start/End: Original strand, 30123049 - 30123119
Alignment:
| Q |
195 |
tggttgtagtcatctgttgctctttggagctcctctgctgtaaaaagctttgccatttctccatttccata |
265 |
Q |
| |
|
||||||||| ||||||||||||||| || ||||||||| ||||||| |||||| ||||||| |||||||| |
|
|
| T |
30123049 |
tggttgtagctatctgttgctctttgcagttcctctgctataaaaagttttgccttttctccttttccata |
30123119 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 45; Significance: 1e-16; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 96 - 272
Target Start/End: Original strand, 21428189 - 21428365
Alignment:
| Q |
96 |
ctgtcaaggtgttttgactttttaaccgcgactatggttccatctggtagcattcctttgtacactgtaccatagccgccttgaccaagaaacctacttt |
195 |
Q |
| |
|
||||||| ||||||||||||||||| | || |||||||||||| || | ||||||||||||| | ||||| || |||||| || |||||| | | |
|
|
| T |
21428189 |
ctgtcaaactgttttgactttttaactgtgattatggttccatccggcgacgttcctttgtacaccatgccataaccctcttgactgaggaacctattct |
21428288 |
T |
|
| Q |
196 |
ggttgtagtcatctgttgctctttggagctcctctgctgtaaaaagctttgccatttctccatttccatatgatgat |
272 |
Q |
| |
|
||||||| ||||| ||||||||| ||||| | |||||||||||||||| |||||||| |||||||| |||||| |
|
|
| T |
21428289 |
cgttgtagatatctgctgctctttgcagctctatttctgtaaaaagctttgctatttctccgtttccataagatgat |
21428365 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University