View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17844_low_45 (Length: 277)

Name: NF17844_low_45
Description: NF17844
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17844_low_45
NF17844_low_45
[»] chr8 (13 HSPs)
chr8 (17-264)||(27459551-27459798)
chr8 (17-218)||(27457737-27457930)
chr8 (17-181)||(27488838-27489001)
chr8 (106-185)||(27454874-27454953)
chr8 (120-181)||(27485415-27485476)
chr8 (120-185)||(27459238-27459303)
chr8 (120-186)||(27454429-27454495)
chr8 (29-101)||(27455001-27455072)
chr8 (17-108)||(27482827-27482917)
chr8 (141-183)||(27482743-27482785)
chr8 (141-185)||(27455973-27456017)
chr8 (141-185)||(27457379-27457423)
chr8 (141-185)||(27481355-27481399)
[»] chr1 (1 HSPs)
chr1 (182-219)||(48872061-48872098)
[»] chr2 (1 HSPs)
chr2 (191-219)||(28544030-28544058)


Alignment Details
Target: chr8 (Bit Score: 244; Significance: 1e-135; HSPs: 13)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 244; E-Value: 1e-135
Query Start/End: Original strand, 17 - 264
Target Start/End: Complemental strand, 27459798 - 27459551
Alignment:
Q  17 gcagtgatgatgttttatgctattgtatcagacattgggtgaaaagttgattcattggcgaggcgatgttgtgtctgtgtcaagttacactttgcacata 116  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  27459798 gcagtgatgatgttttatgctattgtatcagacattgggtgaaaagttgattcattggcgaggcgatgttgtgtctgtgtcaagttacactttgcacata 27459699  T
Q  117 tgcttgacgcagcctttaagaaattcttctctcttctgtctgacaaaaggtgaatctgagccttctttttgtgatgagaaatgatatttgtactaccatt 216  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  27459698 tgcttgacgcagcctttaagaaattcttctctcttctgtctgacaaaaggtgaatctgagccttctttttgtgatgagaaatgatatttgtactaccatt 27459599  T
Q  217 tttgaaaatttgctcttaacccatatgaaattgctcgctcccaggcct 264  Q
    ||||||||||||||||| ||||||||||||||||||||||||||||||    
T  27459598 tttgaaaatttgctctttacccatatgaaattgctcgctcccaggcct 27459551  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 118; E-Value: 3e-60
Query Start/End: Original strand, 17 - 218
Target Start/End: Complemental strand, 27457930 - 27457737
Alignment:
Q  17 gcagtgatgatgttttatgctattgtatcagacattgggtgaaaagttgattcattggcgaggcgatgttgtgtctgtgtcaagttacactttgcacata 116  Q
    ||||||||||||||||  || |||||||||||||||||||||||||||||||||| | |||||||||  ||||||| ||| ||||||||||||||||| |    
T  27457930 gcagtgatgatgtttt--gcaattgtatcagacattgggtgaaaagttgattcat-gccgaggcgat--tgtgtctatgtgaagttacactttgcacaga 27457836  T
Q  117 tgcttgacgcagcctttaagaaattcttctctcttctgtctgacaaaaggtgaatctgagccttctttttgtgatgagaaatgatatttgtactaccatt 216  Q
    ||||||| ||||||| || ||||||||||| ||||||||||||||||||| ||||||||||   ||||||||||||||||||||||||||||||||||||    
T  27457835 tgcttgatgcagcctgtaggaaattcttctttcttctgtctgacaaaaggcgaatctgagc---ctttttgtgatgagaaatgatatttgtactaccatt 27457739  T

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Target: chr8; HSP #3
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 17 - 181
Target Start/End: Complemental strand, 27489001 - 27488838
Alignment:
Q  17 gcagtgatgatgttttatgctattgtatcagacattgggtgaaaagttgattcattggcgaggcgatgttgtgtctgtgtcaagttacactttgcacata 116  Q
    ||||||||||||||||  |  | || ||||||||||||| ||| || || ||||| ||||||| ||| |||||||| ||| ||||||||||||||||| |    
T  27489001 gcagtgatgatgttttcagtaactgaatcagacattgggcgaagagatgtttcat-ggcgaggtgattttgtgtctatgtgaagttacactttgcacaaa 27488903  T
Q  117 tgcttgacgcagcctttaagaaattcttctctcttctgtctgacaaaaggtgaatctgagccttc 181  Q
    || || |||||||||||  |||| |||||||||||||||||||||||||  ||||||||||||||    
T  27488902 tgtttaacgcagcctttgggaaactcttctctcttctgtctgacaaaagccgaatctgagccttc 27488838  T

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Target: chr8; HSP #4
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 106 - 185
Target Start/End: Complemental strand, 27454953 - 27454874
Alignment:
Q  106 ctttgcacatatgcttgacgcagcctttaagaaattcttctctcttctgtctgacaaaaggtgaatctgagccttctttt 185  Q
    ||||| ||| |||||||||||||||||| |||||||||||| ||| ||||||||||||||  ||||||||||||||||||    
T  27454953 ctttgtacagatgcttgacgcagcctttgagaaattcttctttctgctgtctgacaaaagccgaatctgagccttctttt 27454874  T

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Target: chr8; HSP #5
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 120 - 181
Target Start/End: Complemental strand, 27485476 - 27485415
Alignment:
Q  120 ttgacgcagcctttaagaaattcttctctcttctgtctgacaaaaggtgaatctgagccttc 181  Q
    ||||||||||||||  |||| |||||||||||||||||||||||||  ||||||||||||||    
T  27485476 ttgacgcagcctttgggaaactcttctctcttctgtctgacaaaagccgaatctgagccttc 27485415  T

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Target: chr8; HSP #6
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 120 - 185
Target Start/End: Complemental strand, 27459303 - 27459238
Alignment:
Q  120 ttgacgcagcctttaagaaattcttctctcttctgtctgacaaaaggtgaatctgagccttctttt 185  Q
    ||||||||||| ||  |||  ||||| |||||||||||||||||||| ||||||||||||||||||    
T  27459303 ttgacgcagccattgggaacctcttcactcttctgtctgacaaaaggcgaatctgagccttctttt 27459238  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 120 - 186
Target Start/End: Complemental strand, 27454495 - 27454429
Alignment:
Q  120 ttgacgcagcctttaagaaattcttctctcttctgtctgacaaaaggtgaatctgagccttcttttt 186  Q
    ||||||||||| ||  |||  ||||| ||||||||||||| |||||| |||||||||||||||||||    
T  27454495 ttgacgcagcccttgggaacctcttcgctcttctgtctgagaaaaggcgaatctgagccttcttttt 27454429  T

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Target: chr8; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 29 - 101
Target Start/End: Complemental strand, 27455072 - 27455001
Alignment:
Q  29 ttttatgctattgtatcagacattgggtgaaaagttgattcattggcgaggcgatgttgtgtctgtgtcaagt 101  Q
    |||| ||||||||| |||||| |||| || |||||| |||||| ||||||||||| |||||||||| ||||||    
T  27455072 ttttctgctattgtttcagacgttggatggaaagtttattcat-ggcgaggcgattttgtgtctgtatcaagt 27455001  T

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Target: chr8; HSP #9
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 17 - 108
Target Start/End: Complemental strand, 27482917 - 27482827
Alignment:
Q  17 gcagtgatgatgttttatgctattgtatcagacattgggtgaaaagttgattcattggcgaggcgatgttgtgtctgtgtcaagttacactt 108  Q
    ||||||||||||||||  || |||| ||||  ||||||||||| ||||| |||| |||||||| | |  ||||||||||| |||||||||||    
T  27482917 gcagtgatgatgttttcagcaattgaatcaagcattgggtgaagagttgtttca-tggcgaggtggttctgtgtctgtgtgaagttacactt 27482827  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 141 - 183
Target Start/End: Complemental strand, 27482785 - 27482743
Alignment:
Q  141 tcttctctcttctgtctgacaaaaggtgaatctgagccttctt 183  Q
    ||||||||||||||||||| |||||| ||||||||||| ||||    
T  27482785 tcttctctcttctgtctgagaaaaggcgaatctgagccctctt 27482743  T

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Target: chr8; HSP #11
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 141 - 185
Target Start/End: Complemental strand, 27456017 - 27455973
Alignment:
Q  141 tcttctctcttctgtctgacaaaaggtgaatctgagccttctttt 185  Q
    ||||| || |||||||||| |||||| ||||||||||||||||||    
T  27456017 tcttcacttttctgtctgagaaaaggcgaatctgagccttctttt 27455973  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 141 - 185
Target Start/End: Complemental strand, 27457423 - 27457379
Alignment:
Q  141 tcttctctcttctgtctgacaaaaggtgaatctgagccttctttt 185  Q
    ||||| ||||||| ||||| |||||| ||||||||||||||||||    
T  27457423 tcttcactcttctttctgagaaaaggcgaatctgagccttctttt 27457379  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 141 - 185
Target Start/End: Complemental strand, 27481399 - 27481355
Alignment:
Q  141 tcttctctcttctgtctgacaaaaggtgaatctgagccttctttt 185  Q
    |||||||| || ||||||| |||||| ||||||||||||||||||    
T  27481399 tcttctcttttttgtctgagaaaaggcgaatctgagccttctttt 27481355  T

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Target: chr1 (Bit Score: 30; Significance: 0.00000009; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 182 - 219
Target Start/End: Complemental strand, 48872098 - 48872061
Alignment:
Q  182 tttttgtgatgagaaatgatatttgtactaccattttt 219  Q
    ||||||| |||||||||||||||||||| |||||||||    
T  48872098 tttttgttatgagaaatgatatttgtacaaccattttt 48872061  T

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Target: chr2 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 191 - 219
Target Start/End: Original strand, 28544030 - 28544058
Alignment:
Q  191 tgagaaatgatatttgtactaccattttt 219  Q
    |||||||||||||||||||||||||||||    
T  28544030 tgagaaatgatatttgtactaccattttt 28544058  T

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