View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17844_low_49 (Length: 259)

Name: NF17844_low_49
Description: NF17844
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17844_low_49
NF17844_low_49
[»] chr4 (2 HSPs)
chr4 (141-241)||(35774510-35774610)
chr4 (15-98)||(35774658-35774742)
[»] chr8 (2 HSPs)
chr8 (154-201)||(27490247-27490294)
chr8 (143-201)||(16697830-16697888)
[»] chr2 (1 HSPs)
chr2 (143-201)||(4421783-4421841)
[»] chr1 (2 HSPs)
chr1 (145-203)||(35388588-35388646)
chr1 (145-201)||(9126895-9126951)
[»] chr7 (1 HSPs)
chr7 (156-201)||(8063208-8063253)


Alignment Details
Target: chr4 (Bit Score: 97; Significance: 9e-48; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 97; E-Value: 9e-48
Query Start/End: Original strand, 141 - 241
Target Start/End: Complemental strand, 35774610 - 35774510
Alignment:
Q  141 gagacatcaagtctcaacacagactccaactttgaaggaggagtctgccaaaatgtcacacttggccgagcttggccaaaaatttattggtgaagatctt 240  Q
    |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  35774610 gagacatcaagtctcaacacagactccaacttcgaaggaggagtctgccaaaatgtcacacttggccgagcttggccaaaaatttattggtgaagatctt 35774511  T
Q  241 t 241  Q
    |    
T  35774510 t 35774510  T

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Target: chr4; HSP #2
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 15 - 98
Target Start/End: Complemental strand, 35774742 - 35774658
Alignment:
Q  15 aatattaaccaatttgaaaagctatagcaaaaaattaataatttgaaaacctttttccatatccttctcttt-ttttagaatgac 98  Q
    ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||    
T  35774742 aatattaaccaatttgaaaagctatagcaaaaaattaatgatttgaaaacctttttccatatccttctcttttttttagaatgac 35774658  T

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Target: chr8 (Bit Score: 36; Significance: 0.00000000002; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 154 - 201
Target Start/End: Original strand, 27490247 - 27490294
Alignment:
Q  154 tcaacacagactccaactttgaaggaggagtctgccaaaatgtcacac 201  Q
    ||||||| |||||||||| ||||||||||||||||||| |||||||||    
T  27490247 tcaacaccgactccaactctgaaggaggagtctgccaatatgtcacac 27490294  T

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Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 143 - 201
Target Start/End: Original strand, 16697830 - 16697888
Alignment:
Q  143 gacatcaagtctcaacacagactccaactttgaaggaggagtctgccaaaatgtcacac 201  Q
    ||||||||||||||||||  ||| ||||| ||| ||||||| ||||||||| |||||||    
T  16697830 gacatcaagtctcaacactaacttcaactctgacggaggagcctgccaaaaagtcacac 16697888  T

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Target: chr2 (Bit Score: 35; Significance: 0.00000000009; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 143 - 201
Target Start/End: Complemental strand, 4421841 - 4421783
Alignment:
Q  143 gacatcaagtctcaacacagactccaactttgaaggaggagtctgccaaaatgtcacac 201  Q
    ||||||||| |||||||| | ||||||||| || ||||||||||||||||| |||||||    
T  4421841 gacatcaagcctcaacactgcctccaacttcgatggaggagtctgccaaaaggtcacac 4421783  T

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Target: chr1 (Bit Score: 31; Significance: 0.00000002; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 145 - 203
Target Start/End: Original strand, 35388588 - 35388646
Alignment:
Q  145 catcaagtctcaacacagactccaactttgaaggaggagtctgccaaaatgtcacactt 203  Q
    ||||||| |||||||| |||| ||||| |||| ||| |||||| |||||||||||||||    
T  35388588 catcaagcctcaacactgacttcaactatgaatgagaagtctgtcaaaatgtcacactt 35388646  T

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Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 145 - 201
Target Start/End: Original strand, 9126895 - 9126951
Alignment:
Q  145 catcaagtctcaacacagactccaactttgaaggaggagtctgccaaaatgtcacac 201  Q
    ||||||| |||||||| || ||| |||||||||||||||| ||| |||||| |||||    
T  9126895 catcaagcctcaacaccgattcccactttgaaggaggagtttgctaaaatgccacac 9126951  T

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Target: chr7 (Bit Score: 30; Significance: 0.00000009; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 156 - 201
Target Start/End: Complemental strand, 8063253 - 8063208
Alignment:
Q  156 aacacagactccaactttgaaggaggagtctgccaaaatgtcacac 201  Q
    ||||| |||||||||| ||||||||||||||| ||| |||||||||    
T  8063253 aacactgactccaactctgaaggaggagtctgtcaatatgtcacac 8063208  T

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