View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17844_low_5 (Length: 551)

Name: NF17844_low_5
Description: NF17844
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17844_low_5
NF17844_low_5
[»] chr5 (11 HSPs)
chr5 (15-545)||(1738929-1739459)
chr5 (15-546)||(1744271-1744802)
chr5 (28-433)||(1724452-1724857)
chr5 (166-520)||(1759999-1760359)
chr5 (15-135)||(1739510-1739630)
chr5 (15-135)||(1744847-1744967)
chr5 (17-194)||(1725096-1725273)
chr5 (18-166)||(1724857-1725005)
chr5 (138-217)||(1763591-1763671)
chr5 (45-160)||(1760555-1760670)
chr5 (319-404)||(1763481-1763566)
[»] chr3 (6 HSPs)
chr3 (13-443)||(2022802-2023241)
chr3 (94-526)||(3167167-3167608)
chr3 (319-517)||(3156896-3157094)
chr3 (319-419)||(3139182-3139282)
chr3 (166-218)||(3139020-3139072)
chr3 (166-218)||(3156752-3156804)
[»] chr8 (1 HSPs)
chr8 (319-431)||(23852148-23852260)
[»] chr7 (7 HSPs)
chr7 (170-236)||(7484275-7484341)
chr7 (319-417)||(7491190-7491288)
chr7 (319-417)||(7498911-7499009)
chr7 (460-532)||(7484577-7484649)
chr7 (15-62)||(9011747-9011794)
chr7 (370-443)||(9012087-9012160)
chr7 (197-233)||(9011902-9011938)


Alignment Details
Target: chr5 (Bit Score: 473; Significance: 0; HSPs: 11)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 473; E-Value: 0
Query Start/End: Original strand, 15 - 545
Target Start/End: Complemental strand, 1739459 - 1738929
Alignment:
Q  15 accatcttcaatccttgaagtagttgaaccaccaaatcctagaattcccaccccacggttactattactactctccatgtttctcaaaccaacaagagaa 114  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1739459 accatcttcaatccttgaagtagttgaaccaccaaatcctagaattcccaccccacggttactattactactctccatgtttctcaaaccaacaagagaa 1739360  T
Q  115 ggatttaatatatctttcaaatgcaaatcaccatttctatactcaaaagggccaaaaccatgtggggcaatcctagggttaatataagatggtttttgaa 214  Q
    ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1739359 ggatttaatatatctttcaaatgcaaatcaccattactatactcaaaagggccaaaaccatgtggggcaatcctagggttaatataagatggtttttgaa 1739260  T
Q  215 tcatagattccattctaacaccgagtgccccgtaattagggggtgtnnnnnnngtgtttgggtagctaaaataagggttaagaagaggttgccctaaacc 314  Q
    ||||||||||||||||||||||||||||||||||||||||||||||       ||||||||||||| |||||||||||||||||||||||||||||||||    
T  1739259 tcatagattccattctaacaccgagtgccccgtaattagggggtgtaaaaaaagtgtttgggtagcaaaaataagggttaagaagaggttgccctaaacc 1739160  T
Q  315 taattcatacctttgtttaagttgcttttgcaacgcacgttctgccttatgagcgttttggtgtccacctaacgcttgcgaagtagaaaattttcccttg 414  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1739159 taattcatacctttgtttaagttgcttttgcaacgcacgttctgccttatgagcgttttggtgtccacctaacgcttgcgaagtagaaaattttcccttg 1739060  T
Q  415 caaaataagcatgaaaaagtccttgaatccannnnnnnctcctcattcttcttctcatctttccctttattgttgttatttggaaaacgagatgatgaac 514  Q
    |||||||||||||||||||||||||||||||       |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||    
T  1739059 caaaataagcatgaaaaagtccttgaatccatttttttctcctcattcttgttctcatctttccctttattgttgttatttggaaaacgagatgatgaac 1738960  T
Q  515 caacttgcatagtgctaaaaggtctgtgctc 545  Q
    ||||||||||||||||||||||| |||||||    
T  1738959 caacttgcatagtgctaaaaggtttgtgctc 1738929  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 350; E-Value: 0
Query Start/End: Original strand, 15 - 546
Target Start/End: Complemental strand, 1744802 - 1744271
Alignment:
Q  15 accatcttcaatccttgaagtagttgaaccaccaaatcctagaattcccaccccacggttactattactactctccatgtttctcaaaccaacaagagaa 114  Q
    |||||||||||||||||||||| ||| ||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||| || |||||||    
T  1744802 accatcttcaatccttgaagtaattgcaccaccaaatcctagaattcctaccccacgattactattactactctccatgtttctcaaactaataagagaa 1744703  T
Q  115 ggatttaatatatctttcaaatgcaaatcaccatttctatactcaaaagggccaaaaccatgtggggcaatcctagggttaatataagatggtttttgaa 214  Q
    ||||||||||||||||| ||||| ||||||||||| ||||||||||||||||||||||||||||||| |||||  |||||||||||||||||||||||||    
T  1744702 ggatttaatatatcttttaaatgaaaatcaccattactatactcaaaagggccaaaaccatgtggggtaatcccggggttaatataagatggtttttgaa 1744603  T
Q  215 tcatagattccattctaacaccgagtgccccgtaattagggggtgtnnnnnnngtgtttgggtagctaaaataagggttaagaagaggttgccctaaacc 314  Q
    ||||||||||||||||||||||||||||||| ||||||||||||||       |||||||| || ||||||||||||||||||||||| ||| |||||||    
T  1744602 tcatagattccattctaacaccgagtgccccataattagggggtgtaaaaagagtgtttggataactaaaataagggttaagaagaggctgctctaaacc 1744503  T
Q  315 taattcatacctttgtttaagttgcttttgcaacgcacgttctgccttatgagcgttttggtgtccacctaacgcttgcgaagtagaaaattttcccttg 414  Q
    |||| | ||| | ||||||||||||||||| || |||||||| | ||||||||||||||||||||||||||||||||| |||||||||||||||||||||    
T  1744502 taatacgtacttctgtttaagttgcttttgtaatgcacgttccgtcttatgagcgttttggtgtccacctaacgcttgtgaagtagaaaattttcccttg 1744403  T
Q  415 caaaataagcatgaaaaagtccttgaatccannnnnnnctcctcattcttcttctcatctttccctttattgttgttatttggaaaacgagatgatgaac 514  Q
    ||||||||||||||||||| |||||||||||       ||| ||| |||| |||||||| || ||||||||||||||||||||||||| |||||||||||    
T  1744402 caaaataagcatgaaaaagaccttgaatccatttttttctcttcactcttgttctcatcgtttcctttattgttgttatttggaaaacaagatgatgaac 1744303  T
Q  515 caacttgcatagtgctaaaaggtctgtgctcc 546  Q
    ||||||||||||||||||||| | ||||||||    
T  1744302 caacttgcatagtgctaaaagatttgtgctcc 1744271  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 145; E-Value: 5e-76
Query Start/End: Original strand, 28 - 433
Target Start/End: Complemental strand, 1724857 - 1724452
Alignment:
Q  28 cttgaagtagttgaaccaccaaatcctagaattcccaccccacggttactattactactctccatgtttctcaaaccaacaagagaaggatttaatatat 127  Q
    ||||||||||||  ||||||||  |||||||| || || ||||  ||| ||||||||| |||||| |||||||||| |||||||||||| ||||| || |    
T  1724857 cttgaagtagttccaccaccaatacctagaatcccaactccactattattattactaccctccatatttctcaaactaacaagagaagggtttaacatct 1724758  T
Q  128 ctttcaaatgcaaatcaccatttctatactcaaaagggccaaaaccatgtggggcaatcctagggttaatataagatggtttttgaatcatagattccat 227  Q
    ||| ||||  |||| |||||||  ||||| ||||||||||||||| ||||| || ||||| |||| |||| |||||||| |||||||||||||||||||     
T  1724757 cttgcaaacccaaagcaccattattatacccaaaagggccaaaactatgtgaggtaatcccagggctaatgtaagatggattttgaatcatagattccac 1724658  T
Q  228 tctaacaccgagtgccccgtaattagggggtgtnnnnnnngtgtttgggtagctaaaataagggttaagaagaggttgccctaaacctaattcatacctt 327  Q
    |||||| ||||||  ||  |||| ||||| |||        | ||||| || ||||||||| ||||||   ||||||  ||||||||||| |||||||||    
T  1724657 tctaacgccgagtttccgataataaggggatgtaaaaaagctatttggataactaaaataaaggttaaagtgaggttctcctaaacctaaatcatacctt 1724558  T
Q  328 tgtttaagttgcttttgcaacgcacgttctgccttatgagcgttttggtgtccacctaacgcttgcgaagtagaaaattttcccttgcaaaataagcatg 427  Q
     ||||| |||||||||  || |||||||||||||||||||| |||||||| || |||||||| || |||||||||||||||| |||||||||||||||||    
T  1724557 agtttacgttgcttttttaatgcacgttctgccttatgagcattttggtgccctcctaacgcctgtgaagtagaaaattttctcttgcaaaataagcatg 1724458  T
Q  428 aaaaag 433  Q
    ||||||    
T  1724457 aaaaag 1724452  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 116; E-Value: 9e-59
Query Start/End: Original strand, 166 - 520
Target Start/End: Complemental strand, 1760359 - 1759999
Alignment:
Q  166 ccaaaaccatgtggggcaatcctagggttaatataagatggtttttgaatcatagattccattctaacaccgagtgccccgtaattagggggtgtnnnnn 265  Q
    ||||||| |||||  | ||||||||||||||||| |||||||||||| ||||||| |||||||| ||||||||||||||  ||||  | ||||||         
T  1760359 ccaaaactatgtgacgtaatcctagggttaatatcagatggtttttggatcataggttccattccaacaccgagtgccctataatacgagggtgtaaaaa 1760260  T
Q  266 nngtgtttgggtagctaaaataagggttaagaagaggttgccctaaacctaattcatacctttgtttaagttgcttttgcaacgcacgttctgccttatg 365  Q
      || | ||| || |||||||||||||||| | |||||| ||||||||||||||| |||||||||||| |||||||||  || |||||||| |||||||     
T  1760259 aagtatctggataactaaaataagggttaaaatgaggttaccctaaacctaattcctacctttgtttacgttgcttttctaatgcacgttccgccttata 1760160  T
Q  366 agcgttttggtgtccacctaacgcttgcgaagtagaaaattttcccttgcaaaataagcatgaaaaagtccttgaatccannnnnnnctcctcattcttc 465  Q
    ||| |||||||| || || ||||| || ||||||| |||||||| |||||||||||| |||||||||| |||||||||||       ||| |  |||||     
T  1760159 agcattttggtgccctcccaacgcctgtgaagtagtaaattttctcttgcaaaataaacatgaaaaagaccttgaatccaaatttttctctttgttcttg 1760060  T
Q  466 ttc------tcatctttccctttattgttgttatttggaaaacgagatgatgaaccaactt 520  Q
    |||      ||||||||| |||  ||||||||||||||||||| |||||||||||||||||    
T  1760059 ttctaattttcatctttctcttctttgttgttatttggaaaaccagatgatgaaccaactt 1759999  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 15 - 135
Target Start/End: Complemental strand, 1739630 - 1739510
Alignment:
Q  15 accatcttcaatccttgaagtagttgaaccaccaaatcctagaattcccaccccacggttactattactactctccatgtttctcaaaccaacaagagaa 114  Q
    ||||||||||||||| |||| ||||| |||||||||||||||||||||  ||||||  |||||||| |||| |||||| |||||||||| |||||| |||    
T  1739630 accatcttcaatcctcgaagcagttgcaccaccaaatcctagaattccagccccactattactattgctaccctccatatttctcaaactaacaagcgaa 1739531  T
Q  115 ggatttaatatatctttcaaa 135  Q
    || ||||||||||||||||||    
T  1739530 gggtttaatatatctttcaaa 1739510  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 15 - 135
Target Start/End: Complemental strand, 1744967 - 1744847
Alignment:
Q  15 accatcttcaatccttgaagtagttgaaccaccaaatcctagaattcccaccccacggttactattactactctccatgtttctcaaaccaacaagagaa 114  Q
    |||||||||||||||||||| ||||| |||||||||||||| ||||||   |||||  |||||||| |||| || | | |||||||||| || ||| |||    
T  1744967 accatcttcaatccttgaagcagttgcaccaccaaatcctaaaattccagtcccactattactattgctacccttcgtatttctcaaactaaaaagtgaa 1744868  T
Q  115 ggatttaatatatctttcaaa 135  Q
    || ||||||||||||||||||    
T  1744867 gggtttaatatatctttcaaa 1744847  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 17 - 194
Target Start/End: Complemental strand, 1725273 - 1725096
Alignment:
Q  17 catcttcaatccttgaagtagttgaaccaccaaatcctagaattcccaccccacggttactattactactctccatgtttctcaaaccaacaagag---- 112  Q
    |||||||||||||||||||||||  ||||||||  |||||||||||  |||||       ||| |||||||||||| |||||||||| ||||||||        
T  1725273 catcttcaatccttgaagtagttccaccaccaatacctagaattccagccccat------tataactactctccatatttctcaaactaacaagaggaag 1725180  T
Q  113 --aaggatttaatatatctttcaaatgcaaatcaccatttctatactcaaaagggccaaaaccatgtggggcaatcctagggtt 194  Q
      |||| ||||| || |||| ||||  |||| ||||||| |||||| ||||||| |||||||||| ||||  ||||||||||||    
T  1725179 agaagggtttaacatctcttgcaaacacaaagcaccattactatacccaaaaggaccaaaaccatttgggataatcctagggtt 1725096  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 18 - 166
Target Start/End: Complemental strand, 1725005 - 1724857
Alignment:
Q  18 atcttcaatccttgaagtagttgaaccaccaaatcctagaattcccaccccacggttactattactactctccatgtttctcaaaccaacaagagaagga 117  Q
    ||||||||||||||||| ||||  ||||||||  |||||||  || || ||||   |||||||||||| |||||| ||| |||||| ||||| ||||||     
T  1725005 atcttcaatccttgaagcagttccaccaccaatacctagaaccccaactccactagtactattactaccctccatatttttcaaactaacaaaagaaggg 1724906  T
Q  118 tttaatatatctttcaaatgcaaatcaccatttctatactcaaaagggc 166  Q
    ||||| || |||| ||||  ||||  |||||| |||||| |||||||||    
T  1724905 tttaacatctcttgcaaacccaaagtaccattactatacccaaaagggc 1724857  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 138 - 217
Target Start/End: Complemental strand, 1763671 - 1763591
Alignment:
Q  138 caaatcaccatttctatactcaaaagggccaaaaccatgtgg-ggcaatcctagggttaatataagatggtttttgaatca 217  Q
    |||| ||||||| |||||  ||||||||||||||| |||||| || | || ||| ||||||||||||||||||||||||||    
T  1763671 caaaacaccattactatatccaaaagggccaaaactatgtggaggtagtcatagagttaatataagatggtttttgaatca 1763591  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 45 - 160
Target Start/End: Complemental strand, 1760670 - 1760555
Alignment:
Q  45 accaaatcctagaattcccaccccacggttactattactactctccatgtttctcaaaccaacaagagaaggatttaatatatctttcaaatgcaaatca 144  Q
    ||||||||||| | || |  ||||||  |||||||||| || ||| |  ||||||| || |||||||||||| |||||||| |||||||||  |||| ||    
T  1760670 accaaatcctaaattttcagccccactattactattacaaccctcaaaatttctcagactaacaagagaagggtttaatatctctttcaaactcaaaaca 1760571  T
Q  145 ccatttctatactcaa 160  Q
    ||||| ||||||||||    
T  1760570 ccattactatactcaa 1760555  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 319 - 404
Target Start/End: Original strand, 1763481 - 1763566
Alignment:
Q  319 tcatacctttgtttaagttgcttttgcaacgcacgttctgccttatgagcgttttggtgtccacctaacgcttgcgaagtagaaaa 404  Q
    ||||||||||||||| |||||||||  || ||| |||| ||||||||||| ||||| || || |||||||  || |||||||||||    
T  1763481 tcatacctttgtttacgttgcttttctaatgcatgttccgccttatgagctttttgatgccctcctaacgtatgtgaagtagaaaa 1763566  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 99; Significance: 1e-48; HSPs: 6)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 99; E-Value: 1e-48
Query Start/End: Original strand, 13 - 443
Target Start/End: Complemental strand, 2023241 - 2022802
Alignment:
Q  13 tcaccatcttcaatccttgaagtagttgaaccaccaaatcctagaattcccaccccacggttactattactactctccatgtttctcaaaccaacaagag 112  Q
    |||||||||||||||||| ||||||||| | | ||    ||||||||||| |||| |   ||||||||||| | |||||| |||||||||| ||||||||    
T  2023241 tcaccatcttcaatccttaaagtagttgcatccccggtacctagaattccaaccctagaattactattactgccctccatatttctcaaactaacaagag 2023142  T
Q  113 aaggatttaatatatctttcaaatgcaaatcaccatttctatactcaaaagggccaaaaccatgtggggcaatcctagggttaatataagatggtttttg 212  Q
    |||| |||||||| |||| ||||  |||| ||||||| | |||| ||||||| | ||||| |||||| | ||| |||||||||||| ||  |||||||||    
T  2023141 aagggtttaatatctcttgcaaacccaaaccaccattaccatacccaaaaggtctaaaactatgtggagtaattctagggttaataaaaagtggtttttg 2023042  T
Q  213 aatcatagattccattctaacaccgagtgccccgtaattagggggtgtnnnnnnngtgtttgggtagctaaaataagggttaagaagaggttgccctaaa 312  Q
    |||||| ||||||||||||   || | ||| |   ||| |||| ||||       ||  |||| || ||||||||||||||||   ||||||||||||||    
T  2023041 aatcatggattccattctagtcccaattgcgctaaaataagggcgtgtaaaaagagtacttggataactaaaataagggttaaagtgaggttgccctaaa 2022942  T
Q  313 cctaa---------ttcatacctttgtttaagttgcttttgcaacgcacgttctgccttatgagcgttttggtgtccacctaacgcttgcgaagtagaaa 403  Q
    || ||         |||||||||||||||| |||| ||||  |||| |||||| |||||||| || || |||||||| ||||| ||||||||||||||||    
T  2022941 ccaaaagcaccactttcatacctttgtttacgttgtttttctaacgtacgttcagccttatgggcattctggtgtcctcctaaggcttgcgaagtagaaa 2022842  T
Q  404 attttcccttgcaaaataagcatgaaaaagtccttgaatc 443  Q
    |||||| |||||||||  | |||||||||| | |||||||    
T  2022841 attttctcttgcaaaaacaacatgaaaaagactttgaatc 2022802  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 84; E-Value: 1e-39
Query Start/End: Original strand, 94 - 526
Target Start/End: Complemental strand, 3167608 - 3167167
Alignment:
Q  94 tttctcaaaccaacaagagaaggatttaatatatctttcaaatgcaaatcaccatttctatactcaaaagggccaaaaccatgtggggcaatcctagggt 193  Q
    |||||||||| |||||| ||||| |||||||| |||| ||||   ||| |||||||   |||| ||||||||||||||| |||||| | |||||||||||    
T  3167608 tttctcaaactaacaagtgaagggtttaatatctcttgcaaagataaagcaccattatcatacccaaaagggccaaaactatgtggagtaatcctagggt 3167509  T
Q  194 taatataagatggtttttgaatcatagattccattctaacaccgagtgccccgtaattagggggtgtnnnnnnngtgtttgggtagctaaaataagggtt 293  Q
    ||||||||||||| ||||||||||| ||||||||||||   || ||  ||   |||| || ||||||       || ||||| || ||||||||||||||    
T  3167508 taatataagatggcttttgaatcatggattccattctagttccaagccccttataataagagggtgtaaaaagagtatttggataactaaaataagggtt 3167409  T
Q  294 aagaagaggttgccctaaacctaa---------ttcatacctttgtttaagttgcttttgcaacgcacgttctgccttatgagcgttttggtgtccacct 384  Q
    ||    ||||||||||||||| ||         ||||||| |||||||| |||| ||||  || |||||||| |||||||| || || || ||||| |||    
T  3167408 aaagtaaggttgccctaaaccaaaaacaccattttcatacttttgtttacgttgtttttctaaggcacgttcagccttatgggcattctgatgtcctcct 3167309  T
Q  385 aacgcttgcgaagtagaaaattttcccttgcaaaataagcatgaaaaagtccttgaatccannnnnnnctcctcattcttcttctcatctttccctttat 484  Q
    |||||||| || ||||||||||||| |||||||||  | |||||||||| | |||||||         |||  |||| || |||||||||||||||| ||    
T  3167308 aacgcttgtgatgtagaaaattttctcttgcaaaaacaacatgaaaaagactttgaatctgaattgttctcagcattgttgttctcatctttcccttcat 3167209  T
Q  485 tgttgttatttggaaaacgagatgatgaaccaacttgcatag 526  Q
    ||||||||||  |||||  | ||||||||||| |||| ||||    
T  3167208 tgttgttattacgaaaaaaatatgatgaaccaccttgaatag 3167167  T

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Target: chr3; HSP #3
Raw Score: 66; E-Value: 6e-29
Query Start/End: Original strand, 319 - 517
Target Start/End: Original strand, 3156896 - 3157094
Alignment:
Q  319 tcatacctttgtttaagttgcttttgcaacgcacgttctgccttatgagcgttttggtgtccacctaacgcttgcgaagtagaaaattttcccttgcaaa 418  Q
    ||||||||||||||  |||||||||  || |||||||| |||||||||||||| |||||||| || |||||||| ||||||||||||| || ||| ||||    
T  3156896 tcatacctttgtttccgttgcttttctaaagcacgttccgccttatgagcgttctggtgtcctcccaacgcttgtgaagtagaaaattgtctcttacaaa 3156995  T
Q  419 ataagcatgaaaaagtccttgaatccannnnnnnctcctcattcttcttctcatctttccctttattgttgttatttggaaaacgagatgatgaaccaa 517  Q
    |  |||||||||||| ||||||||||        ||| |||||  | ||||||||||| |||| |||||| | ||| ||||||| ||| ||||||||||    
T  3156996 aggagcatgaaaaagaccttgaatccgaattcttctcttcattgatgttctcatcttttccttgattgttatcattaggaaaacaagacgatgaaccaa 3157094  T

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Target: chr3; HSP #4
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 319 - 419
Target Start/End: Original strand, 3139182 - 3139282
Alignment:
Q  319 tcatacctttgtttaagttgcttttgcaacgcacgttctgccttatgagcgttttggtgtccacctaacgcttgcgaagtagaaaattttcccttgcaaa 418  Q
    ||||||||||||| | |||||||||  || || ||||| |||||||| ||||| || ||||| || ||||| || ||||||||||||| || ||||||||    
T  3139182 tcatacctttgttgacgttgcttttctaatgcccgttccgccttatgtgcgttctgatgtcctcccaacgcctgtgaagtagaaaattgtctcttgcaaa 3139281  T
Q  419 a 419  Q
    |    
T  3139282 a 3139282  T

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Target: chr3; HSP #5
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 166 - 218
Target Start/End: Original strand, 3139020 - 3139072
Alignment:
Q  166 ccaaaaccatgtggggcaatcctagggttaatataagatggtttttgaatcat 218  Q
    ||||||| |||||| | ||| |||||||||| ||||| |||||||||||||||    
T  3139020 ccaaaactatgtggagtaattctagggttaaaataaggtggtttttgaatcat 3139072  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 166 - 218
Target Start/End: Original strand, 3156752 - 3156804
Alignment:
Q  166 ccaaaaccatgtggggcaatcctagggttaatataagatggtttttgaatcat 218  Q
    |||||||  ||||||| |||| ||||| ||||||||| |||||||||||||||    
T  3156752 ccaaaactgtgtggggtaatcttagggctaatataaggtggtttttgaatcat 3156804  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 45; Significance: 2e-16; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 319 - 431
Target Start/End: Complemental strand, 23852260 - 23852148
Alignment:
Q  319 tcatacctttgtttaagttgcttttgcaacgcacgttctgccttatgagcgttttggtgtccacctaacgcttgcgaagtagaaaattttcccttgcaaa 418  Q
    ||||||||||||||  |||||||||  || | |||||| |||||||||||||| |||||||| || |||||||| |||||||||||||  | ||| ||||    
T  23852260 tcatacctttgtttccgttgcttttctaaagtacgttccgccttatgagcgttctggtgtcctcccaacgcttgagaagtagaaaattgcctcttacaaa 23852161  T
Q  419 ataagcatgaaaa 431  Q
    |  ||||||||||    
T  23852160 aggagcatgaaaa 23852148  T

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Target: chr7 (Bit Score: 35; Significance: 0.0000000002; HSPs: 7)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 170 - 236
Target Start/End: Original strand, 7484275 - 7484341
Alignment:
Q  170 aaccatgtggggcaatcctagggttaatataagatggtttttgaatcatagattccattctaacacc 236  Q
    |||||| ||||| ||||||||||||| |||||| ||||||||||||  | || ||||||||||||||    
T  7484275 aaccatttggggtaatcctagggttagtataaggtggtttttgaattgttgactccattctaacacc 7484341  T

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Target: chr7; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 319 - 417
Target Start/End: Original strand, 7491190 - 7491288
Alignment:
Q  319 tcatacctttgtttaagttgcttttgcaacgcacgttctgccttatgagcgttttggtgtccacctaacgcttgcgaagtagaaaattttcccttgcaa 417  Q
    |||||||||| |||| |||| |||| |||||||||||| |||||||| || ||||| || || |||||  ||||  ||||||||||||  |||||||||    
T  7491190 tcatacctttctttacgttgtttttccaacgcacgttccgccttatgggcattttgatgccctcctaagccttggaaagtagaaaattgccccttgcaa 7491288  T

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Target: chr7; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 319 - 417
Target Start/End: Original strand, 7498911 - 7499009
Alignment:
Q  319 tcatacctttgtttaagttgcttttgcaacgcacgttctgccttatgagcgttttggtgtccacctaacgcttgcgaagtagaaaattttcccttgcaa 417  Q
    |||||||||| ||| ||||| |||| ||| ||||||||||||||||| || ||||| || || |||||  ||||  ||||||||||||  |||||||||    
T  7498911 tcatacctttcttttagttgtttttccaatgcacgttctgccttatgggcattttgatgccctcctaagccttggaaagtagaaaattgccccttgcaa 7499009  T

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Target: chr7; HSP #4
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 460 - 532
Target Start/End: Original strand, 7484577 - 7484649
Alignment:
Q  460 ttcttcttctcatctttccctttattgttgttatttggaaaacgagatgatgaaccaacttgcatagtgctaa 532  Q
    ||||||||||||||||||| || |||| |||||||  |||||  ||||| |||||||||||| |||| |||||    
T  7484577 ttcttcttctcatctttcctttcattgctgttattatgaaaagaagatgttgaaccaacttgaatagggctaa 7484649  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 15 - 62
Target Start/End: Original strand, 9011747 - 9011794
Alignment:
Q  15 accatcttcaatccttgaagtagttgaaccaccaaatcctagaattcc 62  Q
    ||||||||||||| ||||| |||||| ||||||||| |||||||||||    
T  9011747 accatcttcaatctttgaactagttgcaccaccaaaccctagaattcc 9011794  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 370 - 443
Target Start/End: Original strand, 9012087 - 9012160
Alignment:
Q  370 ttttggtgtccacctaacgcttgcgaagtagaaaattttcccttgcaaaataagcatgaaaaagtccttgaatc 443  Q
    |||||||| ||||| |||||||| | ||||||||||||| |||||||| |   ||||||||| | |||||||||    
T  9012087 ttttggtgcccacccaacgcttgtgcagtagaaaattttgccttgcaataggtgcatgaaaatgaccttgaatc 9012160  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 197 - 233
Target Start/End: Original strand, 9011902 - 9011938
Alignment:
Q  197 tataagatggtttttgaatcatagattccattctaac 233  Q
    |||||| ||||||||||||||| ||||||||||||||    
T  9011902 tataaggtggtttttgaatcattgattccattctaac 9011938  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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