View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17844_low_50 (Length: 251)
Name: NF17844_low_50
Description: NF17844
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17844_low_50 |
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Alignment Details
Target: chr1 (Bit Score: 216; Significance: 1e-119; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 216; E-Value: 1e-119
Query Start/End: Original strand, 1 - 232
Target Start/End: Original strand, 25703375 - 25703606
Alignment:
| Q |
1 |
atattgttcttcgtctcccaagctctaaccaaatctctcttactatccgtcaaatatttcttcaaccttccataaacagattcaactatattagtggttg |
100 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
25703375 |
atattgttcttcgtctcccaagctctaaccaaatctctcttactatccgtcaaatatttcttcaaccttccataaacagattcaactatattaatggttg |
25703474 |
T |
|
| Q |
101 |
ggatacaaagatgcaagacatggtatgtccatgcccttacaatttcttcctacaagggattcaatatggaatgttaaacatagttgagcagctttgggaa |
200 |
Q |
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|
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |||||||||||||||| ||||||||| |
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| T |
25703475 |
ggatacaaagatgcaagacatggtatgtccatgcccttacaatttcttcctgcaagggattcaatatggaatgctaaacatagttgagcaactttgggaa |
25703574 |
T |
|
| Q |
201 |
gtttctacatacattttggaattgtacaatgg |
232 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |
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| T |
25703575 |
gtttctacatacattttggaattgtacaatgg |
25703606 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 108 - 145
Target Start/End: Original strand, 50115884 - 50115921
Alignment:
| Q |
108 |
aagatgcaagacatggtatgtccatgcccttacaattt |
145 |
Q |
| |
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| T |
50115884 |
aagatgcaacacatggtatgtccatgccctcacaattt |
50115921 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 43; Significance: 0.000000000000001; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 30 - 188
Target Start/End: Original strand, 7340205 - 7340363
Alignment:
| Q |
30 |
caaatctctcttactatccgtcaaatatttcttcaaccttccataaacagattcaactatattagtggttgggatacaaagatgcaagacatggtatgtc |
129 |
Q |
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| T |
7340205 |
caaatcttccttactatccatcaaatatttccttaaccttccatgagcaaattcaactctgttagtggttatgttaccaagatgcaagacacagtttgtt |
7340304 |
T |
|
| Q |
130 |
catgcccttacaatttcttcctacaagggattcaatatggaatgttaaacatagttgag |
188 |
Q |
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||||||| | ||||| ||||| ||| |||| ||| |||| || || |||||||||||| |
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|
| T |
7340305 |
catgcccacataatttgttccttcaaaggatgcaacatggtattttcaacatagttgag |
7340363 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 42; Significance: 0.000000000000006; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 18 - 119
Target Start/End: Original strand, 3546190 - 3546291
Alignment:
| Q |
18 |
ccaagctctaaccaaatctctcttactatccgtcaaatatttcttcaaccttccataaacagattcaactatattagtggttgggatacaaagatgcaag |
117 |
Q |
| |
|
|||| ||||| |||||||| |||||||||| |||||||||||||||||||||||| || ||| |||| | |||||||||| | | |||||||||||| |
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| T |
3546190 |
ccaacctctagccaaatcttccttactatccatcaaatatttcttcaaccttccattggcatatttaactttgttagtggttgtgttgcaaagatgcaag |
3546289 |
T |
|
| Q |
118 |
ac |
119 |
Q |
| |
|
|| |
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|
| T |
3546290 |
ac |
3546291 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 15 - 232
Target Start/End: Complemental strand, 9266366 - 9266148
Alignment:
| Q |
15 |
ctcccaagctctaaccaaatctctcttactatccgtcaaatatttcttcaaccttccataaacagattcaactatattagtggttgggatacaaagatgc |
114 |
Q |
| |
|
||||||| || | |||||||||| |||||||||| |||||||||| |||||| || ||| | ||||||||||| | ||||||||| ||| |||| | |
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| T |
9266366 |
ctcccaaactttgaccaaatctcccttactatccttcaaatattttttcaacattacatgagcagattcaactgtgttagtggttattttaccaagaggt |
9266267 |
T |
|
| Q |
115 |
aagacatggtatgtccatg-cccttacaatttcttcctacaagggattcaatatggaatgttaaacatagttgagcagctttgggaagtttctacataca |
213 |
Q |
| |
|
||||||||| |||||||| || ||||||| | || || |||| ||| |||||| || || |||||||||||| | ||||| | |||| ||||| || |
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| T |
9266266 |
aagacatgggttgtccatgtcctttacaatctttttcttaaaggtatttaatatgttattttcaacatagttgaggaactttgagtagttcctacacacc |
9266167 |
T |
|
| Q |
214 |
ttttggaattgtacaatgg |
232 |
Q |
| |
|
| | ||||||| ||||||| |
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|
| T |
9266166 |
tctcggaattgcacaatgg |
9266148 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 29 - 99
Target Start/End: Original strand, 16059802 - 16059872
Alignment:
| Q |
29 |
ccaaatctctcttactatccgtcaaatatttcttcaaccttccataaacagattcaactatattagtggtt |
99 |
Q |
| |
|
||||||||| ||||| |||| |||||| ||||||||| |||||||| ||||||||||| ||||||||||| |
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| T |
16059802 |
ccaaatctcccttaccatccttcaaatttttcttcaattttccataaccagattcaactttattagtggtt |
16059872 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 36; Significance: 0.00000000002; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 78 - 169
Target Start/End: Complemental strand, 24148364 - 24148273
Alignment:
| Q |
78 |
agattcaactatattagtggttgggatacaaagatgcaagacatggtatgtccatgcccttacaatttcttcctacaagggattcaatatgg |
169 |
Q |
| |
|
|||||||| ||| |||||||||| | | |||||||| ||||||||||||||||| || ||||||| ||||| |||||||||||| |||| |
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|
| T |
24148364 |
agattcaattatgttagtggttgtgttgtcaagatgcatcacatggtatgtccatgctctcacaattttttccttcaagggattcaaaatgg |
24148273 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 108 - 145
Target Start/End: Original strand, 48248987 - 48249024
Alignment:
| Q |
108 |
aagatgcaagacatggtatgtccatgcccttacaattt |
145 |
Q |
| |
|
||||||||| |||||||||||||||||||| ||||||| |
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| T |
48248987 |
aagatgcaacacatggtatgtccatgccctcacaattt |
48249024 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 108 - 145
Target Start/End: Original strand, 28347518 - 28347555
Alignment:
| Q |
108 |
aagatgcaagacatggtatgtccatgcccttacaattt |
145 |
Q |
| |
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||||||||||||||||| |||||||||||| ||||||| |
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| T |
28347518 |
aagatgcaagacatggtctgtccatgccctcacaattt |
28347555 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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