View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17844_low_54 (Length: 241)
Name: NF17844_low_54
Description: NF17844
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17844_low_54 |
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Alignment Details
Target: chr2 (Bit Score: 195; Significance: 1e-106; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 195; E-Value: 1e-106
Query Start/End: Original strand, 1 - 227
Target Start/End: Complemental strand, 21942617 - 21942391
Alignment:
| Q |
1 |
tgtactagcagaagccacttcattaccattgcaaacttctcttagtagaacctcccgtgatttgttgtcaatgctaactgctgcacttgtcaaccttttg |
100 |
Q |
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| T |
21942617 |
tgtacttgcagaagccacttcattaccattgcaaacttctcttagtagaatctcctgtgatttgttgtcaatgctagctgctgcacttgtcaaccttttg |
21942518 |
T |
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| Q |
101 |
ccagttaaaatttctagaatcatcttcccaaaattgtagacatcattcccgagttcctctttaattgcttcattgtattctgcattaaaaacaaatctaa |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
21942517 |
ccagttaaaatttctagaatcatcttcccaaaattgtagacatcattccttagttcctctttaattgcttcattgtattctgcattaaaaataaatctaa |
21942418 |
T |
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| Q |
201 |
aatcagtgttgatatactgttctttgt |
227 |
Q |
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|||||||||||||||| |||||||||| |
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| T |
21942417 |
aatcagtgttgatatagtgttctttgt |
21942391 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 97; E-Value: 8e-48
Query Start/End: Original strand, 16 - 227
Target Start/End: Original strand, 10799579 - 10799791
Alignment:
| Q |
16 |
cacttcattaccattgcaaacttctcttagtagaacctcccgtgatttgttgtcaatgctaactgctgcacttgtcaaccttttgccagttaaaatttct |
115 |
Q |
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||||||||| ||||| ||||||||||||| ||| ||| |||||||| ||| |||| | |||||||||||||||||||| |||| |||||||||||| |
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| T |
10799579 |
cacttcattgtcattgtaaacttctcttagaagagtctcatgtgatttgctgtgaatgttggctgctgcacttgtcaaccttctgccggttaaaatttct |
10799678 |
T |
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| Q |
116 |
agaatcatcttcccaaaattgtagacatcattcccgagttcctctttaattgcttcattgtattctg-cattaaaaacaaatctaaaatcagtgttgata |
214 |
Q |
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||||||||||||||||||||||||||||| | ||||||||||||| |||| |||||||||||||| ||| |||| ||| |||||||||||||||||| |
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| T |
10799679 |
agaatcatcttcccaaaattgtagacatcgctgccgagttcctcttccattgattcattgtattctgccataaaaattaaacctaaaatcagtgttgata |
10799778 |
T |
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| Q |
215 |
tactgttctttgt |
227 |
Q |
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| T |
10799779 |
tggtgttctttgt |
10799791 |
T |
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