View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17844_low_56 (Length: 240)
Name: NF17844_low_56
Description: NF17844
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17844_low_56 |
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Alignment Details
Target: chr2 (Bit Score: 69; Significance: 4e-31; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 82 - 225
Target Start/End: Complemental strand, 9615494 - 9615351
Alignment:
| Q |
82 |
ttgtgatgagcaatttgtatgtgaaaaatgcttcggt-gtgaataatgcttcagtaatcattttgaaaaagagattagaatttgttctatgttttggcct |
180 |
Q |
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| T |
9615494 |
ttgtgatgaccaatttgtatgtcaaaaatgcttcagttgtaaataaagcttcggtactcatttcaaaaaggagatcagaatt-gttctatgctttggcct |
9615396 |
T |
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| Q |
181 |
atttctttgtctgttctcagtattgttatagtgcatcacatattg |
225 |
Q |
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| T |
9615395 |
atttctttgtctgttctcagtattattatagtgaatctcatattg |
9615351 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 50; Significance: 9e-20; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 158 - 227
Target Start/End: Complemental strand, 12354535 - 12354466
Alignment:
| Q |
158 |
gaatttgttctatgttttggcctatttctttgtctgttctcagtattgttatagtgcatcacatattgtt |
227 |
Q |
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| T |
12354535 |
gaatttgctctatgttttggcctatttctttgtctgttctcaatattattatagtgaatcatatattgtt |
12354466 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 23 - 82
Target Start/End: Complemental strand, 12354639 - 12354581
Alignment:
| Q |
23 |
tggtttccctcttggatctaagccaaaggaaaaaatgcttcagttgtgaatagtgtcatt |
82 |
Q |
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| T |
12354639 |
tggtttccctcttggatctaagccaaagga-aaaatgcttaagctgtgaataatgtcatt |
12354581 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 43; Significance: 0.000000000000001; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 152 - 218
Target Start/End: Original strand, 2377486 - 2377552
Alignment:
| Q |
152 |
agattagaatttgttctatgttttggcctatttctttgtctgttctcagtattgttatagtgcatca |
218 |
Q |
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| T |
2377486 |
agatcagaatttgctctatgctttggcctatttctttgcctgttctcagtattattatagtgaatca |
2377552 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 156 - 218
Target Start/End: Complemental strand, 5690485 - 5690423
Alignment:
| Q |
156 |
tagaatttgttctatgttttggcctatttctttgtctgttctcagtattgttatagtgcatca |
218 |
Q |
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| T |
5690485 |
tagaatttgctctatgtttcggcctatttctttgtctgttctcggtattattatagtgaatca |
5690423 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 23 - 82
Target Start/End: Original strand, 2377378 - 2377436
Alignment:
| Q |
23 |
tggtttccctcttggatctaagccaaaggaaaaaatgcttcagttgtgaatagtgtcatt |
82 |
Q |
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| T |
2377378 |
tggtttccctcttggatctaaaccaaagg-aaaaacgcttcatctgtgaataatgtcatt |
2377436 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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