View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17844_low_58 (Length: 238)

Name: NF17844_low_58
Description: NF17844
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17844_low_58
NF17844_low_58
[»] chr6 (8 HSPs)
chr6 (19-220)||(32681509-32681712)
chr6 (31-93)||(21992535-21992597)
chr6 (40-91)||(27434850-27434901)
chr6 (31-71)||(13705429-13705469)
chr6 (23-82)||(1607912-1607971)
chr6 (37-71)||(33452251-33452285)
chr6 (37-82)||(4856854-4856899)
chr6 (23-71)||(4749567-4749615)
[»] scaffold0490 (1 HSPs)
scaffold0490 (24-93)||(9281-9350)
[»] chr3 (15 HSPs)
chr3 (24-93)||(20795275-20795344)
chr3 (24-93)||(30160600-30160669)
chr3 (93-177)||(20783869-20783953)
chr3 (31-82)||(2765962-2766013)
chr3 (31-74)||(50246543-50246586)
chr3 (93-174)||(38353662-38353743)
chr3 (93-177)||(50246425-50246509)
chr3 (31-94)||(44907730-44907795)
chr3 (31-65)||(6445124-6445158)
chr3 (112-177)||(2765845-2765910)
chr3 (37-82)||(20919400-20919445)
chr3 (37-82)||(20928362-20928407)
chr3 (89-166)||(37198032-37198109)
chr3 (31-71)||(9270699-9270739)
chr3 (23-71)||(37187561-37187608)
[»] chr2 (9 HSPs)
chr2 (93-177)||(16139495-16139579)
chr2 (25-82)||(21119978-21120035)
chr2 (36-177)||(20103643-20103800)
chr2 (23-94)||(45049618-45049689)
chr2 (93-177)||(24971974-24972058)
chr2 (39-82)||(24972129-24972172)
chr2 (93-177)||(21120061-21120144)
chr2 (31-82)||(41747494-41747545)
chr2 (19-75)||(16311549-16311605)
[»] chr8 (21 HSPs)
chr8 (94-177)||(17890717-17890800)
chr8 (94-177)||(19742760-19742843)
chr8 (93-177)||(8351380-8351464)
chr8 (93-177)||(35136896-35136980)
chr8 (93-177)||(45250829-45250913)
chr8 (31-75)||(45250945-45250989)
chr8 (31-94)||(287454-287517)
chr8 (19-82)||(18666917-18666980)
chr8 (31-82)||(23689093-23689144)
chr8 (23-94)||(27521081-27521152)
chr8 (105-177)||(18667045-18667117)
chr8 (93-177)||(25064162-25064246)
chr8 (38-89)||(8362450-8362501)
chr8 (96-177)||(8362524-8362605)
chr8 (37-71)||(4930305-4930339)
chr8 (31-65)||(17894980-17895014)
chr8 (31-94)||(40267245-40267310)
chr8 (37-94)||(12167104-12167163)
chr8 (37-94)||(12411532-12411591)
chr8 (51-87)||(17890821-17890857)
chr8 (51-87)||(19742703-19742739)
[»] chr1 (6 HSPs)
chr1 (24-87)||(19095481-19095544)
chr1 (93-177)||(45915182-45915266)
chr1 (31-82)||(15535170-15535221)
chr1 (31-82)||(22544099-22544150)
chr1 (40-82)||(45915107-45915149)
chr1 (23-94)||(8313947-8314018)
[»] chr7 (4 HSPs)
chr7 (96-177)||(29494197-29494278)
chr7 (37-80)||(7946423-7946466)
chr7 (37-82)||(29494118-29494163)
chr7 (93-177)||(7946309-7946395)
[»] chr4 (10 HSPs)
chr4 (96-177)||(14253031-14253112)
chr4 (23-94)||(24003-24074)
chr4 (23-94)||(13914663-13914734)
chr4 (40-91)||(18066656-18066707)
chr4 (23-82)||(35648090-35648149)
chr4 (31-71)||(37069617-37069657)
chr4 (31-71)||(13923219-13923259)
chr4 (32-71)||(10780384-10780423)
chr4 (32-71)||(10973993-10974032)
chr4 (38-93)||(52538248-52538303)
[»] scaffold0216 (3 HSPs)
scaffold0216 (93-177)||(18252-18336)
scaffold0216 (19-82)||(18160-18224)
scaffold0216 (95-177)||(25444-25526)
[»] scaffold0003 (1 HSPs)
scaffold0003 (40-91)||(52462-52513)
[»] chr5 (3 HSPs)
chr5 (19-82)||(27588739-27588802)
chr5 (31-94)||(19205828-19205891)
chr5 (93-177)||(27588833-27588917)
[»] scaffold0155 (2 HSPs)
scaffold0155 (40-82)||(26805-26847)
scaffold0155 (113-177)||(26883-26947)
[»] scaffold0018 (1 HSPs)
scaffold0018 (31-95)||(67167-67231)
[»] scaffold0022 (1 HSPs)
scaffold0022 (31-94)||(101230-101293)
[»] scaffold0179 (1 HSPs)
scaffold0179 (41-114)||(32036-32109)
[»] scaffold0059 (2 HSPs)
scaffold0059 (37-82)||(67125-67170)
scaffold0059 (37-82)||(75230-75275)


Alignment Details
Target: chr6 (Bit Score: 164; Significance: 9e-88; HSPs: 8)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 164; E-Value: 9e-88
Query Start/End: Original strand, 19 - 220
Target Start/End: Original strand, 32681509 - 32681712
Alignment:
Q  19 atgccatgattattttttctatatatagacaatttgtttttcattattttcatgtgtttcttcctcccataaaaaagtattttc-tgtgttttgaaagca 117  Q
    ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||    
T  32681509 atgccatgattattttttctatatatagacaatttatttttcattattttcatgtgtttcttcctcccataaaaaagttttttcttgtgttttgaaagca 32681608  T
Q  118 taaaattgtaatcactttgttctagattatgggattgattttc-ttttttatttgtatctatcagctaatgttactctctcaggtttcattggaaagcat 216  Q
    | |||||||||||||||| |||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||    
T  32681609 tgaaattgtaatcactttcttctagattatgggattgattttctttttttatttgtatctatcagttaatgttactctctcaggtctcattggaaagcat 32681708  T
Q  217 gttt 220  Q
    ||||    
T  32681709 gttt 32681712  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 31 - 93
Target Start/End: Complemental strand, 21992597 - 21992535
Alignment:
Q  31 ttttttctatatatagacaatttgtttttcattattttcatgtgtttcttcctcccataaaaa 93  Q
    ||||||||||||||||||||||||||||||||||||||||| | | ||||||||||| |||||    
T  21992597 ttttttctatatatagacaatttgtttttcattattttcatctatctcttcctcccacaaaaa 21992535  T

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Target: chr6; HSP #3
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 40 - 91
Target Start/End: Original strand, 27434850 - 27434901
Alignment:
Q  40 tatatagacaatttgtttttcattattttcatgtgtttcttcctcccataaa 91  Q
    |||||||||||||||||||||||||||||||||||| |||||| ||||||||    
T  27434850 tatatagacaatttgtttttcattattttcatgtgtctcttccccccataaa 27434901  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 31 - 71
Target Start/End: Complemental strand, 13705469 - 13705429
Alignment:
Q  31 ttttttctatatatagacaatttgtttttcattattttcat 71  Q
    ||||||||| |||||||||||||||||||||| ||||||||    
T  13705469 ttttttctagatatagacaatttgtttttcatcattttcat 13705429  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 23 - 82
Target Start/End: Complemental strand, 1607971 - 1607912
Alignment:
Q  23 catgattattttttctatatatagacaatttgtttttcattattttcatgtgtttcttcc 82  Q
    ||||||| ||||  |||||||| |||||||||||||||||| ||||||| ||| ||||||    
T  1607971 catgatttttttccctatatattgacaatttgtttttcattgttttcatatgtctcttcc 1607912  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 37 - 71
Target Start/End: Complemental strand, 33452285 - 33452251
Alignment:
Q  37 ctatatatagacaatttgtttttcattattttcat 71  Q
    |||||||||||||||||||||||||| ||||||||    
T  33452285 ctatatatagacaatttgtttttcatcattttcat 33452251  T

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Target: chr6; HSP #7
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 37 - 82
Target Start/End: Complemental strand, 4856899 - 4856854
Alignment:
Q  37 ctatatatagacaatttgtttttcattattttcatgtgtttcttcc 82  Q
    |||||||| |||||||||||||||||| ||||||| ||| ||||||    
T  4856899 ctatatattgacaatttgtttttcattgttttcatatgtctcttcc 4856854  T

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Target: chr6; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 23 - 71
Target Start/End: Original strand, 4749567 - 4749615
Alignment:
Q  23 catgattattttttctatatatagacaatttgtttttcattattttcat 71  Q
    ||||||| |||| | |||||||| ||||||||||||||||||| |||||    
T  4749567 catgatttttttctatatatataaacaatttgtttttcattatcttcat 4749615  T

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Target: scaffold0490 (Bit Score: 50; Significance: 9e-20; HSPs: 1)
Name: scaffold0490
Description:

Target: scaffold0490; HSP #1
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 24 - 93
Target Start/End: Original strand, 9281 - 9350
Alignment:
Q  24 atgattattttttctatatatagacaatttgtttttcattattttcatgtgtttcttcctcccataaaaa 93  Q
    |||||| ||||||||||||||||||||||||||||||||||||||||| | | ||||||||||| |||||    
T  9281 atgatttttttttctatatatagacaatttgtttttcattattttcatctatctcttcctcccacaaaaa 9350  T

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Target: chr3 (Bit Score: 50; Significance: 9e-20; HSPs: 15)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 24 - 93
Target Start/End: Complemental strand, 20795344 - 20795275
Alignment:
Q  24 atgattattttttctatatatagacaatttgtttttcattattttcatgtgtttcttcctcccataaaaa 93  Q
    |||||| ||||||||||||||||||||||||||||||||||||||||| | | ||||||||||| |||||    
T  20795344 atgatttttttttctatatatagacaatttgtttttcattattttcatctatctcttcctcccacaaaaa 20795275  T

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Target: chr3; HSP #2
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 24 - 93
Target Start/End: Original strand, 30160600 - 30160669
Alignment:
Q  24 atgattattttttctatatatagacaatttgtttttcattattttcatgtgtttcttcctcccataaaaa 93  Q
    |||||| ||||||||||||||||||||||| ||||||||||||||||| | | ||||||||||| |||||    
T  30160600 atgatttttttttctatatatagacaatttatttttcattattttcatctatctcttcctcccacaaaaa 30160669  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 93 - 177
Target Start/End: Complemental strand, 20783953 - 20783869
Alignment:
Q  93 aagtattttctgtgttttgaaagcataaaattgtaatcactttgttctagattatgggattgattttcttttttatttgtatcta 177  Q
    ||||||||| |||||||| |||||||| ||   ||||||||| ||| ||||||||| | ||||||||||||||||||||||||||    
T  20783953 aagtattttatgtgttttaaaagcatataagattaatcacttggttgtagattatgaggttgattttcttttttatttgtatcta 20783869  T

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Target: chr3; HSP #4
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 31 - 82
Target Start/End: Complemental strand, 2766013 - 2765962
Alignment:
Q  31 ttttttctatatatagacaatttgtttttcattattttcatgtgtttcttcc 82  Q
    ||||| ||||||||||||||||||||||||||||||||||||||| ||||||    
T  2766013 tttttcctatatatagacaatttgtttttcattattttcatgtgtctcttcc 2765962  T

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Target: chr3; HSP #5
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 31 - 74
Target Start/End: Complemental strand, 50246586 - 50246543
Alignment:
Q  31 ttttttctatatatagacaatttgtttttcattattttcatgtg 74  Q
    ||||| ||||||||||||||||||||||||||||||||||||||    
T  50246586 tttttcctatatatagacaatttgtttttcattattttcatgtg 50246543  T

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Target: chr3; HSP #6
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 93 - 174
Target Start/End: Original strand, 38353662 - 38353743
Alignment:
Q  93 aagtattttctgtgttttgaaagcataaaattgtaatcactttgttctagattatgggattgattttcttttttatttgtat 174  Q
    ||||||||| |||||||| |||||||| ||   ||||||||| ||| ||||||||| | ||||||||||||||||| |||||    
T  38353662 aagtattttatgtgttttaaaagcatataagattaatcacttggttgtagattatgaggttgattttcttttttatctgtat 38353743  T

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Target: chr3; HSP #7
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 93 - 177
Target Start/End: Complemental strand, 50246509 - 50246425
Alignment:
Q  93 aagtattttctgtgttttgaaagcataaaattgtaatcactttgttctagattatgggattgattttcttttttatttgtatcta 177  Q
    ||||||||| |||||| | |||||||| || | |||||| || ||| || ||||| || ||||||||||||||||||||||||||    
T  50246509 aagtattttatgtgttgtaaaagcatagaagtttaatcatttagttgtaaattatagggttgattttcttttttatttgtatcta 50246425  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 31 - 94
Target Start/End: Complemental strand, 44907795 - 44907730
Alignment:
Q  31 ttttttctatatataga--caatttgtttttcattattttcatgtgtttcttcctcccataaaaaa 94  Q
    |||||||||||||||||  ||||||| |||||||||||||||| |   ||||||||||||||||||    
T  44907795 ttttttctatatatagagacaatttgcttttcattattttcatctacatcttcctcccataaaaaa 44907730  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 31 - 65
Target Start/End: Complemental strand, 6445158 - 6445124
Alignment:
Q  31 ttttttctatatatagacaatttgtttttcattat 65  Q
    ||||||||||||||| |||||||||||||||||||    
T  6445158 ttttttctatatataaacaatttgtttttcattat 6445124  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 112 - 177
Target Start/End: Complemental strand, 2765910 - 2765845
Alignment:
Q  112 aaagcataaaattgtaatcactttgttctagattatgggattgattttcttttttatttgtatcta 177  Q
    |||||||| || | |||||| || ||| || ||||| || ||||||||||||||||||||||||||    
T  2765910 aaagcatagaagtttaatcatttggttgtaaattatagggttgattttcttttttatttgtatcta 2765845  T

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Target: chr3; HSP #11
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 37 - 82
Target Start/End: Original strand, 20919400 - 20919445
Alignment:
Q  37 ctatatatagacaatttgtttttcattattttcatgtgtttcttcc 82  Q
    |||||||| ||||||||||||||| |||||||||| ||| ||||||    
T  20919400 ctatatattgacaatttgtttttctttattttcatatgtctcttcc 20919445  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 37 - 82
Target Start/End: Original strand, 20928362 - 20928407
Alignment:
Q  37 ctatatatagacaatttgtttttcattattttcatgtgtttcttcc 82  Q
    |||||||| ||||||||||||||| |||||||||| ||| ||||||    
T  20928362 ctatatattgacaatttgtttttctttattttcatatgtctcttcc 20928407  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 89 - 166
Target Start/End: Original strand, 37198032 - 37198109
Alignment:
Q  89 aaaaaagtattttctgtgttttgaaagcataaaattgtaatcactttgttctagattatgggattgattttctttttt 166  Q
    |||||||||||||||||||||| |||||||  || | ||||||||| ||| || |||||| | || ||||| ||||||    
T  37198032 aaaaaagtattttctgtgttttaaaagcatggaagtttaatcacttggttgtatattatgaggtttattttatttttt 37198109  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 31 - 71
Target Start/End: Complemental strand, 9270739 - 9270699
Alignment:
Q  31 ttttttctatatatagacaatttgtttttcattattttcat 71  Q
    ||||| |||||||||||||| ||| ||||||||||||||||    
T  9270739 tttttcctatatatagacaacttgcttttcattattttcat 9270699  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 23 - 71
Target Start/End: Original strand, 37187561 - 37187608
Alignment:
Q  23 catgattattttttctatatatagacaatttgtttttcattattttcat 71  Q
    ||||||| ||||||||||||||| |||||||| |||||||||| |||||    
T  37187561 catgatttttttttctatatataaacaatttg-ttttcattatcttcat 37187608  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 49; Significance: 4e-19; HSPs: 9)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 93 - 177
Target Start/End: Original strand, 16139495 - 16139579
Alignment:
Q  93 aagtattttctgtgttttgaaagcataaaattgtaatcactttgttctagattatgggattgattttcttttttatttgtatcta 177  Q
    ||||||||| |||||||| |||||||| || | ||||||||| ||| ||||||||||  ||||||||||||||||||||||||||    
T  16139495 aagtattttatgtgttttaaaagcatataagtttaatcacttggttgtagattatggagttgattttcttttttatttgtatcta 16139579  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 25 - 82
Target Start/End: Original strand, 21119978 - 21120035
Alignment:
Q  25 tgattattttttctatatatagacaatttgtttttcattattttcatgtgtttcttcc 82  Q
    ||||| ||||| ||||||||||||||||||||||||||||||||||||||| ||||||    
T  21119978 tgattttttttcctatatatagacaatttgtttttcattattttcatgtgtctcttcc 21120035  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 36 - 177
Target Start/End: Original strand, 20103643 - 20103800
Alignment:
Q  36 tctatatatagacaatttgtttttcattattttcatgtgtttcttcctcccat----------------aaaaaagtattttctgtgttttgaaagcata 119  Q
    |||||||||||||| ||||||||||||||||||||||||| |||||| |||||                ||| ||||| ||| |||||||| ||||||||    
T  20103643 tctatatatagacactttgtttttcattattttcatgtgtctcttccccccataaacttttttccgtaaaaacaagtactttatgtgttttaaaagcata 20103742  T
Q  120 aaattgtaatcactttgttctagattatgggattgattttcttttttatttgtatcta 177  Q
     ||   ||||||||| ||| ||||||||| | ||||||||||||||||||||||||||    
T  20103743 taagattaatcacttggttgtagattatgtggttgattttcttttttatttgtatcta 20103800  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 23 - 94
Target Start/End: Original strand, 45049618 - 45049689
Alignment:
Q  23 catgattattttttctatatatagacaatttgtttttcattattttcatgtgtttcttcctcccataaaaaa 94  Q
    ||||||| ||||| |||||||||||||| |||||||||||||||||||| |   ||||||||||||||||||    
T  45049618 catgattttttttcctatatatagacaaattgtttttcattattttcatctacctcttcctcccataaaaaa 45049689  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 93 - 177
Target Start/End: Complemental strand, 24972058 - 24971974
Alignment:
Q  93 aagtattttctgtgttttgaaagcataaaattgtaatcactttgttctagattatgggattgattttcttttttatttgtatcta 177  Q
    ||||||||| |||||||| |||||||| || | |||||| || ||| |||||||| || |||||||||||||||| |||||||||    
T  24972058 aagtattttatgtgttttcaaagcatagaagtttaatcatttggttgtagattatagggttgattttcttttttagttgtatcta 24971974  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 39 - 82
Target Start/End: Complemental strand, 24972172 - 24972129
Alignment:
Q  39 atatatagacaatttgtttttcattattttcatgtgtttcttcc 82  Q
    ||||||||||||||||||||||||||||||||||||| ||||||    
T  24972172 atatatagacaatttgtttttcattattttcatgtgtctcttcc 24972129  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 93 - 177
Target Start/End: Original strand, 21120061 - 21120144
Alignment:
Q  93 aagtattttctgtgttttgaaagcataaaattgtaatcactttgttctagattatgggattgattttcttttttatttgtatcta 177  Q
    ||||||||| |||||||| |||||||| || | |||||| || ||| |||||| | || |||||||||||||||| |||||||||    
T  21120061 aagtattttatgtgttttcaaagcatagaagtttaatcatttggttgtagattgtagg-ttgattttcttttttagttgtatcta 21120144  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 31 - 82
Target Start/End: Original strand, 41747494 - 41747545
Alignment:
Q  31 ttttttctatatatagacaatttgtttttcattattttcatgtgtttcttcc 82  Q
    ||||| |||||||| |||||||||||||||||| ||||||| ||| ||||||    
T  41747494 tttttcctatatattgacaatttgtttttcattgttttcatatgtctcttcc 41747545  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 19 - 75
Target Start/End: Complemental strand, 16311605 - 16311549
Alignment:
Q  19 atgccatgattattttttctatatatagacaatttgtttttcattattttcatgtgt 75  Q
    ||||||||||| ||||  ||||||||||||| ||   ||||||||||||||||||||    
T  16311605 atgccatgatttttttccctatatatagacatttaacttttcattattttcatgtgt 16311549  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 48; Significance: 1e-18; HSPs: 21)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 94 - 177
Target Start/End: Complemental strand, 17890800 - 17890717
Alignment:
Q  94 agtattttctgtgttttgaaagcataaaattgtaatcactttgttctagattatgggattgattttcttttttatttgtatcta 177  Q
    |||||||| |||||||| |||||||| ||   ||||||||| ||| ||||||||||| ||||||||||||||||||||||||||    
T  17890800 agtattttatgtgttttaaaagcatataagattaatcacttggttgtagattatggggttgattttcttttttatttgtatcta 17890717  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 94 - 177
Target Start/End: Original strand, 19742760 - 19742843
Alignment:
Q  94 agtattttctgtgttttgaaagcataaaattgtaatcactttgttctagattatgggattgattttcttttttatttgtatcta 177  Q
    |||||||| |||||||| |||||||| ||   ||||||||| ||| ||||||||||| ||||||||||||||||||||||||||    
T  19742760 agtattttatgtgttttaaaagcatataagattaatcacttggttgtagattatggggttgattttcttttttatttgtatcta 19742843  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 93 - 177
Target Start/End: Original strand, 8351380 - 8351464
Alignment:
Q  93 aagtattttctgtgttttgaaagcataaaattgtaatcactttgttctagattatgggattgattttcttttttatttgtatcta 177  Q
    ||||||||| |||||||| |||||||| ||   ||||||||| ||| ||||||||| | ||||||||||||||||||||||||||    
T  8351380 aagtattttatgtgttttaaaagcatataagattaatcacttggttgtagattatgaggttgattttcttttttatttgtatcta 8351464  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 93 - 177
Target Start/End: Original strand, 35136896 - 35136980
Alignment:
Q  93 aagtattttctgtgttttgaaagcataaaattgtaatcactttgttctagattatgggattgattttcttttttatttgtatcta 177  Q
    ||||||||| |||||||| |||||||| ||   ||||||||| ||| ||||| ||||| ||||||||||||||||||||||||||    
T  35136896 aagtattttatgtgttttaaaagcatataagattaatcacttggttgtagatcatggggttgattttcttttttatttgtatcta 35136980  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 93 - 177
Target Start/End: Complemental strand, 45250913 - 45250829
Alignment:
Q  93 aagtattttctgtgttttgaaagcataaaattgtaatcactttgttctagattatgggattgattttcttttttatttgtatcta 177  Q
    ||||||||| |||||||| |||||||| || | |||||| || ||| |||||||| || |||||||||||||||| |||||||||    
T  45250913 aagtattttatgtgttttcaaagcatagaagtttaatcatttggttgtagattatagggttgattttcttttttagttgtatcta 45250829  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 31 - 75
Target Start/End: Complemental strand, 45250989 - 45250945
Alignment:
Q  31 ttttttctatatatagacaatttgtttttcattattttcatgtgt 75  Q
    ||||| |||||||||||||||||||||||||||||||||||||||    
T  45250989 tttttcctatatatagacaatttgtttttcattattttcatgtgt 45250945  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 31 - 94
Target Start/End: Original strand, 287454 - 287517
Alignment:
Q  31 ttttttctatatatagacaatttgtttttcattattttcatgtgtttcttcctcccataaaaaa 94  Q
    ||||| |||||||||||||| |||||||||||||||||||| |   ||||||||||||||||||    
T  287454 tttttcctatatatagacaaattgtttttcattattttcatctacctcttcctcccataaaaaa 287517  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 19 - 82
Target Start/End: Original strand, 18666917 - 18666980
Alignment:
Q  19 atgccatgattattttttctatatatagacaatttgtttttcattattttcatgtgtttcttcc 82  Q
    ||||| ||||| ||||  |||||||||| |||||||||||||||||||||||||||| ||||||    
T  18666917 atgccttgatttttttccctatatataggcaatttgtttttcattattttcatgtgtctcttcc 18666980  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 31 - 82
Target Start/End: Complemental strand, 23689144 - 23689093
Alignment:
Q  31 ttttttctatatatagacaatttgtttttcattattttcatgtgtttcttcc 82  Q
    ||||| ||||||||| ||||||||||||||||||||||||||||| ||||||    
T  23689144 tttttcctatatataaacaatttgtttttcattattttcatgtgtctcttcc 23689093  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 23 - 94
Target Start/End: Complemental strand, 27521152 - 27521081
Alignment:
Q  23 catgattattttttctatatatagacaatttgtttttcattattttcatgtgtttcttcctcccataaaaaa 94  Q
    ||||||| ||||| ||||| ||||| ||||||||||||||||||||||| |   ||||||||||||||||||    
T  27521152 catgattttttttcctatacatagataatttgtttttcattattttcatctacatcttcctcccataaaaaa 27521081  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 105 - 177
Target Start/End: Original strand, 18667045 - 18667117
Alignment:
Q  105 tgttttgaaagcataaaattgtaatcactttgttctagattatgggattgattttcttttttatttgtatcta 177  Q
    |||||| ||||||||||| | |||||| || ||| |||||||| ||  |||||||||||||||||||||||||    
T  18667045 tgttttaaaagcataaaagtttaatcatttggttgtagattatagggctgattttcttttttatttgtatcta 18667117  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 93 - 177
Target Start/End: Original strand, 25064162 - 25064246
Alignment:
Q  93 aagtattttctgtgttttgaaagcataaaattgtaatcactttgttctagattatgggattgattttcttttttatttgtatcta 177  Q
    ||||||||| |||||||| |||||||| ||   ||||||||| ||| |  |||||||| |||||||| |||||||||||||||||    
T  25064162 aagtattttatgtgttttaaaagcatataaagttaatcacttggttgtcaattatggggttgattttattttttatttgtatcta 25064246  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 38 - 89
Target Start/End: Original strand, 8362450 - 8362501
Alignment:
Q  38 tatatatagacaatttgtttttcattattttcatgtgtttcttcctcccata 89  Q
    ||||||||||||||||||||||||||||||| ||| || |||||| ||||||    
T  8362450 tatatatagacaatttgtttttcattatttttatgggtctcttccccccata 8362501  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 96 - 177
Target Start/End: Original strand, 8362524 - 8362605
Alignment:
Q  96 tattttctgtgttttgaaagcataaaattgtaatcactttgttctagattatgggattgattttcttttttatttgtatcta 177  Q
    |||||| |||||||| |||||||| || | |||||| ||  || || ||||| || ||||||||||||||||||||||||||    
T  8362524 tattttatgtgttttaaaagcatataagtttaatcatttgattgtaaattatagggttgattttcttttttatttgtatcta 8362605  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 37 - 71
Target Start/End: Original strand, 4930305 - 4930339
Alignment:
Q  37 ctatatatagacaatttgtttttcattattttcat 71  Q
    |||||||||||||||||||||||||| ||||||||    
T  4930305 ctatatatagacaatttgtttttcatcattttcat 4930339  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 31 - 65
Target Start/End: Complemental strand, 17895014 - 17894980
Alignment:
Q  31 ttttttctatatatagacaatttgtttttcattat 65  Q
    ||||||||||||||| |||||||||||||||||||    
T  17895014 ttttttctatatataaacaatttgtttttcattat 17894980  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 31 - 94
Target Start/End: Complemental strand, 40267310 - 40267245
Alignment:
Q  31 ttttttctatatataga--caatttgtttttcattattttcatgtgtttcttcctcccataaaaaa 94  Q
    ||||||||||||| |||  ||||||| |||||||||||||||| |   ||||||||||||||||||    
T  40267310 ttttttctatatacagagacaatttgcttttcattattttcatctacatcttcctcccataaaaaa 40267245  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 37 - 94
Target Start/End: Complemental strand, 12167163 - 12167104
Alignment:
Q  37 ctatatatagacaatttg--tttttcattattttcatgtgtttcttcctcccataaaaaa 94  Q
    ||||||||| ||||||||  ||||| ||||||||||| | | ||||||||||||||||||    
T  12167163 ctatatataaacaatttggtttttttattattttcatctatctcttcctcccataaaaaa 12167104  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 37 - 94
Target Start/End: Complemental strand, 12411591 - 12411532
Alignment:
Q  37 ctatatatagacaatttg--tttttcattattttcatgtgtttcttcctcccataaaaaa 94  Q
    ||||||||| ||||||||  ||||| ||||||||||| | | ||||||||||||||||||    
T  12411591 ctatatataaacaatttggtttttttattattttcatctatctcttcctcccataaaaaa 12411532  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 51 - 87
Target Start/End: Complemental strand, 17890857 - 17890821
Alignment:
Q  51 tttgtttttcattattttcatgtgtttcttcctccca 87  Q
    ||||||||||||||||||||||||| | |||||||||    
T  17890857 tttgtttttcattattttcatgtgtctattcctccca 17890821  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 51 - 87
Target Start/End: Original strand, 19742703 - 19742739
Alignment:
Q  51 tttgtttttcattattttcatgtgtttcttcctccca 87  Q
    ||||||||||||||||||||||||| |||||| ||||    
T  19742703 tttgtttttcattattttcatgtgtctcttcccccca 19742739  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 48; Significance: 1e-18; HSPs: 6)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 24 - 87
Target Start/End: Original strand, 19095481 - 19095544
Alignment:
Q  24 atgattattttttctatatatagacaatttgtttttcattattttcatgtgtttcttcctccca 87  Q
    |||||| ||||||||||||||||||||||||||||||||||||||||| | | |||||||||||    
T  19095481 atgatttttttttctatatatagacaatttgtttttcattattttcatctatctcttcctccca 19095544  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 93 - 177
Target Start/End: Original strand, 45915182 - 45915266
Alignment:
Q  93 aagtattttctgtgttttgaaagcataaaattgtaatcactttgttctagattatgggattgattttcttttttatttgtatcta 177  Q
    ||||||||| |||||||| ||||||||||| | |||||| || ||| ||||||||    ||||||||||||||||||||||||||    
T  45915182 aagtattttatgtgttttaaaagcataaaagtttaatcatttggttgtagattatacagttgattttcttttttatttgtatcta 45915266  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 31 - 82
Target Start/End: Complemental strand, 15535221 - 15535170
Alignment:
Q  31 ttttttctatatatagacaatttgtttttcattattttcatgtgtttcttcc 82  Q
    ||||| ||||||||| ||||||||||||||||||||||||||||| ||||||    
T  15535221 tttttcctatatataaacaatttgtttttcattattttcatgtgtctcttcc 15535170  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 31 - 82
Target Start/End: Complemental strand, 22544150 - 22544099
Alignment:
Q  31 ttttttctatatatagacaatttgtttttcattattttcatgtgtttcttcc 82  Q
    ||||| ||||||||| ||||||||||||||||||||||||||||| ||||||    
T  22544150 tttttcctatatataaacaatttgtttttcattattttcatgtgtctcttcc 22544099  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 40 - 82
Target Start/End: Original strand, 45915107 - 45915149
Alignment:
Q  40 tatatagacaatttgtttttcattattttcatgtgtttcttcc 82  Q
    |||||||||||||||||||||||||||||||||||| ||||||    
T  45915107 tatatagacaatttgtttttcattattttcatgtgtctcttcc 45915149  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 23 - 94
Target Start/End: Complemental strand, 8314018 - 8313947
Alignment:
Q  23 catgattattttttctatatatagacaatttgtttttcattattttcatgtgtttcttcctcccataaaaaa 94  Q
    ||||||| ||||| |||||||||||||| || ||||||||||||||||| |   | ||||||||||||||||    
T  8314018 catgattttttttcctatatatagacaaattatttttcattattttcatctacctattcctcccataaaaaa 8313947  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 46; Significance: 2e-17; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 96 - 177
Target Start/End: Original strand, 29494197 - 29494278
Alignment:
Q  96 tattttctgtgttttgaaagcataaaattgtaatcactttgttctagattatgggattgattttcttttttatttgtatcta 177  Q
    |||||| |||||||| |||||||| || | |||||| || ||| |||||||| |||||||||||||||||||||||||||||    
T  29494197 tattttatgtgttttaaaagcatataagtttaatcatttggttgtagattataggattgattttcttttttatttgtatcta 29494278  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 37 - 80
Target Start/End: Complemental strand, 7946466 - 7946423
Alignment:
Q  37 ctatatatagacaatttgtttttcattattttcatgtgtttctt 80  Q
    ||||||||||||||||||||||||||||||||||||||| ||||    
T  7946466 ctatatatagacaatttgtttttcattattttcatgtgtctctt 7946423  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 37 - 82
Target Start/End: Original strand, 29494118 - 29494163
Alignment:
Q  37 ctatatatagacaatttgtttttcattattttcatgtgtttcttcc 82  Q
    ||||||||||||||||||||||||||||||||||| ||| ||||||    
T  29494118 ctatatatagacaatttgtttttcattattttcatttgtctcttcc 29494163  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 93 - 177
Target Start/End: Complemental strand, 7946395 - 7946309
Alignment:
Q  93 aagtattttctgtgttttgaaagcataaaattgtaatcactttgttctagatta---tgggattgattttcttttttatttgtatcta 177  Q
    ||||||||| ||| |||| ||||||||||| | |||||| || ||| |||||||   | || ||||||||||||||||||||||||||    
T  7946395 aagtattttatgttttttaaaagcataaaaatttaatca-ttggttgtagattaatatagggttgattttcttttttatttgtatcta 7946309  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 46; Significance: 2e-17; HSPs: 10)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 96 - 177
Target Start/End: Complemental strand, 14253112 - 14253031
Alignment:
Q  96 tattttctgtgttttgaaagcataaaattgtaatcactttgttctagattatgggattgattttcttttttatttgtatcta 177  Q
    |||||| |||||||| |||||||| ||   ||||||||| ||| ||||||||||| ||||||||||||||||||||||||||    
T  14253112 tattttatgtgttttaaaagcatataagattaatcacttggttgtagattatggggttgattttcttttttatttgtatcta 14253031  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 23 - 94
Target Start/End: Complemental strand, 24074 - 24003
Alignment:
Q  23 catgattattttttctatatatagacaatttgtttttcattattttcatgtgtttcttcctcccataaaaaa 94  Q
    ||||||| ||||| |||||||||||||| |||||||||||||||||||| |   ||||||||||||||||||    
T  24074 catgattttttttcctatatatagacaaattgtttttcattattttcatctacctcttcctcccataaaaaa 24003  T

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Target: chr4; HSP #3
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 23 - 94
Target Start/End: Complemental strand, 13914734 - 13914663
Alignment:
Q  23 catgattattttttctatatatagacaatttgtttttcattattttcatgtgtttcttcctcccataaaaaa 94  Q
    ||||||| ||||| |||||||||||||| |||||||||||||||||||| |   ||||||||||||||||||    
T  13914734 catgattttttttcctatatatagacaaattgtttttcattattttcatctacctcttcctcccataaaaaa 13914663  T

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Target: chr4; HSP #4
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 40 - 91
Target Start/End: Complemental strand, 18066707 - 18066656
Alignment:
Q  40 tatatagacaatttgtttttcattattttcatgtgtttcttcctcccataaa 91  Q
    |||||||||||||||||||||||||||||||||||| |||||| ||||||||    
T  18066707 tatatagacaatttgtttttcattattttcatgtgtctcttccccccataaa 18066656  T

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Target: chr4; HSP #5
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 23 - 82
Target Start/End: Original strand, 35648090 - 35648149
Alignment:
Q  23 catgattattttttctatatatagacaatttgtttttcattattttcatgtgtttcttcc 82  Q
    ||||||| ||||| |||||||| |||||||||||||||||||||||||| ||| ||||||    
T  35648090 catgattttttttcctatatattgacaatttgtttttcattattttcatatgtctcttcc 35648149  T

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Target: chr4; HSP #6
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 31 - 71
Target Start/End: Complemental strand, 37069657 - 37069617
Alignment:
Q  31 ttttttctatatatagacaatttgtttttcattattttcat 71  Q
    |||||||||||||||||||||||||||||||| ||||||||    
T  37069657 ttttttctatatatagacaatttgtttttcatcattttcat 37069617  T

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Target: chr4; HSP #7
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 31 - 71
Target Start/End: Complemental strand, 13923259 - 13923219
Alignment:
Q  31 ttttttctatatatagacaatttgtttttcattattttcat 71  Q
    ||||| |||||||||||||||||||||||||| ||||||||    
T  13923259 tttttcctatatatagacaatttgtttttcatcattttcat 13923219  T

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Target: chr4; HSP #8
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 32 - 71
Target Start/End: Original strand, 10780384 - 10780423
Alignment:
Q  32 tttttctatatatagacaatttgtttttcattattttcat 71  Q
    |||| |||||||||| ||||||||||||||||||||||||    
T  10780384 ttttcctatatataggcaatttgtttttcattattttcat 10780423  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 32 - 71
Target Start/End: Original strand, 10973993 - 10974032
Alignment:
Q  32 tttttctatatatagacaatttgtttttcattattttcat 71  Q
    |||| |||||||||| ||||||||||||||||||||||||    
T  10973993 ttttcctatatataggcaatttgtttttcattattttcat 10974032  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 38 - 93
Target Start/End: Original strand, 52538248 - 52538303
Alignment:
Q  38 tatatatagacaatttgtttttcattattttcatgtgtttcttcctcccataaaaa 93  Q
    |||||| |||||||||| |||||||||||||||| |   |||||||||||||||||    
T  52538248 tatatagagacaatttgcttttcattattttcatctacatcttcctcccataaaaa 52538303  T

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Target: scaffold0216 (Bit Score: 45; Significance: 9e-17; HSPs: 3)
Name: scaffold0216
Description:

Target: scaffold0216; HSP #1
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 93 - 177
Target Start/End: Original strand, 18252 - 18336
Alignment:
Q  93 aagtattttctgtgttttgaaagcataaaattgtaatcactttgttctagattatgggattgattttcttttttatttgtatcta 177  Q
    ||||||||| |||||||| |||||||| || | |||||| || ||| |||||||| || ||||||||||||||||||||||||||    
T  18252 aagtattttatgtgttttcaaagcatagaagtttaatcatttggttgtagattatagggttgattttcttttttatttgtatcta 18336  T

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Target: scaffold0216; HSP #2
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 19 - 82
Target Start/End: Original strand, 18160 - 18224
Alignment:
Q  19 atgccatgattattttttc-tatatatagacaatttgtttttcattattttcatgtgtttcttcc 82  Q
    ||||| ||||| ||||||| |||||| ||||||||||||| ||||||||||||||||| ||||||    
T  18160 atgccttgatttttttttcctatatagagacaatttgtttatcattattttcatgtgtctcttcc 18224  T

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Target: scaffold0216; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 95 - 177
Target Start/End: Original strand, 25444 - 25526
Alignment:
Q  95 gtattttctgtgttttgaaagcataaaattgtaatcactttgttctagattatgggattgattttcttttttatttgtatcta 177  Q
    |||||||  ||||||| |||||||| || | |||||| || ||| || |||||  | ||||||||||||||||||||||||||    
T  25444 gtattttacgtgttttaaaagcatagaagtttaatcatttggttgtaaattatatggttgattttcttttttatttgtatcta 25526  T

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Target: scaffold0003 (Bit Score: 44; Significance: 4e-16; HSPs: 1)
Name: scaffold0003
Description:

Target: scaffold0003; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 40 - 91
Target Start/End: Complemental strand, 52513 - 52462
Alignment:
Q  40 tatatagacaatttgtttttcattattttcatgtgtttcttcctcccataaa 91  Q
    |||||||||||||||||||||||||||||||||||| |||||| ||||||||    
T  52513 tatatagacaatttgtttttcattattttcatgtgtctcttccccccataaa 52462  T

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Target: chr5 (Bit Score: 44; Significance: 4e-16; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 19 - 82
Target Start/End: Original strand, 27588739 - 27588802
Alignment:
Q  19 atgccatgattattttttctatatatagacaatttgtttttcattattttcatgtgtttcttcc 82  Q
    ||||| ||||| ||||| | ||||||||||||||||||||||||||||||||||||| ||||||    
T  27588739 atgccttgattttttttccaatatatagacaatttgtttttcattattttcatgtgtctcttcc 27588802  T

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Target: chr5; HSP #2
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 31 - 94
Target Start/End: Complemental strand, 19205891 - 19205828
Alignment:
Q  31 ttttttctatatatagacaatttgtttttcattattttcatgtgtttcttcctcccataaaaaa 94  Q
    ||||| ||||||||||| ||||||||||||||||||||||| |   ||||||||||||||||||    
T  19205891 tttttcctatatatagataatttgtttttcattattttcatctacatcttcctcccataaaaaa 19205828  T

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Target: chr5; HSP #3
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 93 - 177
Target Start/End: Original strand, 27588833 - 27588917
Alignment:
Q  93 aagtattttctgtgttttgaaagcataaaattgtaatcactttgttctagattatgggattgattttcttttttatttgtatcta 177  Q
    ||||||||| |||||||| |||||||| || | |||||| ||  || |||||||| || |||||||||||||||| |||||||||    
T  27588833 aagtattttatgtgttttcaaagcatagaagtttaatcatttgattgtagattatagggttgattttcttttttagttgtatcta 27588917  T

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Target: scaffold0155 (Bit Score: 39; Significance: 0.0000000000003; HSPs: 2)
Name: scaffold0155
Description:

Target: scaffold0155; HSP #1
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 40 - 82
Target Start/End: Original strand, 26805 - 26847
Alignment:
Q  40 tatatagacaatttgtttttcattattttcatgtgtttcttcc 82  Q
    |||||||||||||||||||||||||||||||||||| ||||||    
T  26805 tatatagacaatttgtttttcattattttcatgtgtctcttcc 26847  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0155; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 113 - 177
Target Start/End: Original strand, 26883 - 26947
Alignment:
Q  113 aagcataaaattgtaatcactttgttctagattatgggattgattttcttttttatttgtatcta 177  Q
    ||||||| || | |||||| || ||| |||||||| || ||||||||||||||||||||||||||    
T  26883 aagcatagaaatttaatcatttggttgtagattatagggttgattttcttttttatttgtatcta 26947  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0018 (Bit Score: 37; Significance: 0.000000000005; HSPs: 1)
Name: scaffold0018
Description:

Target: scaffold0018; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 31 - 95
Target Start/End: Complemental strand, 67231 - 67167
Alignment:
Q  31 ttttttctatatatagacaatttgtttttcattattttcatgtgtttcttcctcccataaaaaag 95  Q
    ||||| ||||||||| ||||||||||||||||||||||||| |   |||||||||| ||||||||    
T  67231 tttttcctatatatacacaatttgtttttcattattttcatctacctcttcctcccttaaaaaag 67167  T

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Target: scaffold0022 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: scaffold0022
Description:

Target: scaffold0022; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 31 - 94
Target Start/End: Original strand, 101230 - 101293
Alignment:
Q  31 ttttttctatatatagacaatttgtttttcattattttcatgtgtttcttcctcccataaaaaa 94  Q
    |||||||||||||||||||| ||||||| |||||||||||| |   |||| |||||||||||||    
T  101230 ttttttctatatatagacaaattgttttacattattttcatctacctctttctcccataaaaaa 101293  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0179 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: scaffold0179
Description:

Target: scaffold0179; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 41 - 114
Target Start/End: Complemental strand, 32109 - 32036
Alignment:
Q  41 atatagacaatttgtttttcattattttcatgtgtttcttcctcccataaaaaagtattttctgtgttttgaaa 114  Q
    ||||||||||||| |||||||||| |||||| |   |||||||||||| |||| | ||||| ||||||||||||    
T  32109 atatagacaatttttttttcattactttcatctacatcttcctcccatgaaaatgcattttgtgtgttttgaaa 32036  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0059 (Bit Score: 30; Significance: 0.00000008; HSPs: 2)
Name: scaffold0059
Description:

Target: scaffold0059; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 37 - 82
Target Start/End: Complemental strand, 67170 - 67125
Alignment:
Q  37 ctatatatagacaatttgtttttcattattttcatgtgtttcttcc 82  Q
    ||||||||  ||||||||||||||||||||||||| ||| ||||||    
T  67170 ctatatatttacaatttgtttttcattattttcatatgtctcttcc 67125  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0059; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 37 - 82
Target Start/End: Complemental strand, 75275 - 75230
Alignment:
Q  37 ctatatatagacaatttgtttttcattattttcatgtgtttcttcc 82  Q
    ||||||||  ||||||||||||||||||||||||| ||| ||||||    
T  75275 ctatatatttacaatttgtttttcattattttcatatgtctcttcc 75230  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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