View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17844_low_6 (Length: 541)
Name: NF17844_low_6
Description: NF17844
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17844_low_6 |
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Alignment Details
Target: chr3 (Bit Score: 137; Significance: 3e-71; HSPs: 10)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 137; E-Value: 3e-71
Query Start/End: Original strand, 324 - 484
Target Start/End: Complemental strand, 6267303 - 6267143
Alignment:
| Q |
324 |
gaatgttttcttgtgattacttgctcatgtcgtaacagctgaattatagatcccatcttctaatatattcaagccttcatatcttaaattgatggctttc |
423 |
Q |
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| T |
6267303 |
gaatgttttcttgtgattacttgctcatgtcgtaacagctgaattatacatcccatcttctaatatattcaagccttcatatctttaattggtggctttc |
6267204 |
T |
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| Q |
424 |
ccttgtgcttttttagttaagattaaaataataattttataattatagtttgattcctact |
484 |
Q |
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| T |
6267203 |
ccttgtgcttttatagttaagattaaaataataattttatagttatactttgattcctact |
6267143 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 109; E-Value: 1e-54
Query Start/End: Original strand, 134 - 254
Target Start/End: Complemental strand, 6177711 - 6177591
Alignment:
| Q |
134 |
gatccaacctaatcttgcatgctcttgtgctcagtcactgctgaattatccacaacaaccattaattctagaggtaatattttcttccaaatgtttcttc |
233 |
Q |
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| T |
6177711 |
gatcctacctattcttgcatgctcttgtgttcagtcactgctgaattatccacaacaaccattaattctagaggtaatattttcttccaaatgtttcttc |
6177612 |
T |
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| Q |
234 |
attttcttctgttcattgaac |
254 |
Q |
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| T |
6177611 |
attttcttctgttcattgaac |
6177591 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 85; E-Value: 3e-40
Query Start/End: Original strand, 135 - 254
Target Start/End: Complemental strand, 6267490 - 6267373
Alignment:
| Q |
135 |
atccaacctaatcttgcatgctcttgtgctcagtcactgctgaattatccacaacaaccattaattctagaggtaatattttcttccaaatgtttcttca |
234 |
Q |
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| T |
6267490 |
atccaacctaatcttgcatgctctcgtgttcagtcactgttgaact--ccacagcaaccattaattctagaggtaagattttcttccaaatgtttcttca |
6267393 |
T |
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| Q |
235 |
ttttcttctgttcattgaac |
254 |
Q |
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| T |
6267392 |
ttttcttctgttcattgaac |
6267373 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 166 - 250
Target Start/End: Complemental strand, 6178767 - 6178683
Alignment:
| Q |
166 |
agtcactgctgaattatccacaacaaccattaattctagaggtaatattttcttccaaatgtttcttcattttcttctgttcatt |
250 |
Q |
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| T |
6178767 |
agtcactgctgaactctaaacaacaacctttaattctaaaggtaatattttcttccaattgtttcttcattttctactgttcatt |
6178683 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 193 - 254
Target Start/End: Complemental strand, 6260500 - 6260438
Alignment:
| Q |
193 |
cattaattctagaggtaatattttcttccaaatgtttcttcattttcttctg-ttcattgaac |
254 |
Q |
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| T |
6260500 |
cattaattctagaggtaatattttcttccaaatgtttcttcattttctactgtttcattgaac |
6260438 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 22 - 87
Target Start/End: Complemental strand, 6178937 - 6178872
Alignment:
| Q |
22 |
taacacccttcttgttgttgagtcatgttgaccaagtggaaccttcccaccacttgttttaacttt |
87 |
Q |
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| T |
6178937 |
taacacccttcctgttcttgagtcatgttgaccatgtggaaccttcctaccacttgttttaacttt |
6178872 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #7
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 400 - 466
Target Start/End: Complemental strand, 6178563 - 6178497
Alignment:
| Q |
400 |
tcatatcttaaattgatggctttcccttgtgcttttttagttaagattaaaataataattttataat |
466 |
Q |
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| T |
6178563 |
tcatatctttaattaatggctctcccttgtgcatttttagttaagattaaaatagtaattttataat |
6178497 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #8
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 361 - 426
Target Start/End: Complemental strand, 6177491 - 6177426
Alignment:
| Q |
361 |
gctgaattatagatcccatcttctaatatattcaagccttcatatcttaaattgatggctttccct |
426 |
Q |
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| T |
6177491 |
gctgaattattgatcccatcttctaatatattcaagccttcatatctttaattaacggcttcccct |
6177426 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 426 - 455
Target Start/End: Complemental strand, 6260281 - 6260252
Alignment:
| Q |
426 |
ttgtgcttttttagttaagattaaaataat |
455 |
Q |
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| T |
6260281 |
ttgtgcttttttagttaagattaaaataat |
6260252 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #10
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 400 - 436
Target Start/End: Complemental strand, 6260316 - 6260280
Alignment:
| Q |
400 |
tcatatcttaaattgatggctttcccttgtgcttttt |
436 |
Q |
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| T |
6260316 |
tcatatctttaattaatggctttcccttgtgcttttt |
6260280 |
T |
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