View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17844_low_60 (Length: 229)
Name: NF17844_low_60
Description: NF17844
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17844_low_60 |
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Alignment Details
Target: chr3 (Bit Score: 191; Significance: 1e-104; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 191; E-Value: 1e-104
Query Start/End: Original strand, 18 - 212
Target Start/End: Original strand, 42518315 - 42518509
Alignment:
| Q |
18 |
atagaccaagggtgtttgatggctttagaggcttgacttgctgcaactaaatcgttaaactcatcatcaacatctgaagttccccgaatcttaatcaact |
117 |
Q |
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| T |
42518315 |
atagaccaagggtgtttgatggctttagaggcttgacttgctgcaagtaaatcgttaaactcatcatcaacatctgaagttccccgaatcttaatcaact |
42518414 |
T |
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| Q |
118 |
cctttttagctttgtcatctagacctctttcaatcaatgaacttggcgaatcgggaagaaagattgcaccaataatgatcattatcgcgggaact |
212 |
Q |
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| T |
42518415 |
cctttttagctttgtcatctagacctctttcaatcaatgaacttggcgaatcgggaagaaagattgcaccaataatgatcattatcgcgggaact |
42518509 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 162; E-Value: 1e-86
Query Start/End: Original strand, 23 - 212
Target Start/End: Original strand, 1239998 - 1240187
Alignment:
| Q |
23 |
ccaagggtgtttgatggctttagaggcttgacttgctgcaactaaatcgttaaactcatcatcaacatctgaagttccccgaatcttaatcaactccttt |
122 |
Q |
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| T |
1239998 |
ccaagggtatttgatggctttagaggcttgacttgctgcaagtaaatcgttaaactcatcatcaacatctgatgtcccccgaatcttaatcaactccttt |
1240097 |
T |
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| Q |
123 |
ttagctttgtcatctagacctctttcaatcaatgaacttggcgaatcgggaagaaagattgcaccaataatgatcattatcgcgggaact |
212 |
Q |
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| T |
1240098 |
ttagctttgtcatcttgacctctttcaatcaatgaacttggcgaatcgggaagaaagattgcaccgataattatcattatcgcgggaact |
1240187 |
T |
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