View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17844_low_63 (Length: 226)
Name: NF17844_low_63
Description: NF17844
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17844_low_63 |
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Alignment Details
Target: chr7 (Bit Score: 154; Significance: 8e-82; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 154; E-Value: 8e-82
Query Start/End: Original strand, 1 - 220
Target Start/End: Complemental strand, 41917480 - 41917262
Alignment:
| Q |
1 |
ctattgtccctaacttcgtactt-atattcactcctttgcttgcccatctttggcattctagttgcaccaactcctacannnnnnnnnngtcaccataaa |
99 |
Q |
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| T |
41917480 |
ctattgtccctaacttcatactttatattcactcctttgcttgcccatctttggcattctagttgcaccaactcctacatttttttt--gtcaccataaa |
41917383 |
T |
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| Q |
100 |
attaatgttaatcaatatcacatgatcgatgttttattaaaactagactttattcttgttaggggaaaactaataaaacattgattttgctccgaagggt |
199 |
Q |
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||||||||||||||||||||||||||||||||||| ||||||||||||||| |||||||||||| |||||||||||||||||||||||| |||||||||| |
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| T |
41917382 |
attaatgttaatcaatatcacatgatcgatgtttttttaaaactagacttttttcttgttagggtaaaactaataaaacattgattttgttccgaagggt |
41917283 |
T |
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| Q |
200 |
ttgaaaggtacgggactacga |
220 |
Q |
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|||||||||||| |||||||| |
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| T |
41917282 |
ttgaaaggtacgtgactacga |
41917262 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 1 - 75
Target Start/End: Original strand, 26832750 - 26832825
Alignment:
| Q |
1 |
ctattgtccctaacttcgtac-ttatattcactcctttgcttgcccatctttggcattctagttgcaccaactcct |
75 |
Q |
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||||||||||||||||| ||| |||||||||| ||||||||| |||||| ||||||||| ||| |||||||||| |
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| T |
26832750 |
ctattgtccctaacttcatactttatattcacacctttgcttctccatctacggcattctacttgtaccaactcct |
26832825 |
T |
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