View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17844_low_69 (Length: 212)

Name: NF17844_low_69
Description: NF17844
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17844_low_69
NF17844_low_69
[»] chr6 (4 HSPs)
chr6 (57-123)||(4177451-4177517)
chr6 (50-123)||(4078533-4078606)
chr6 (151-195)||(4177539-4177583)
chr6 (151-188)||(4078474-4078511)


Alignment Details
Target: chr6 (Bit Score: 63; Significance: 1e-27; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 63; E-Value: 1e-27
Query Start/End: Original strand, 57 - 123
Target Start/End: Original strand, 4177451 - 4177517
Alignment:
Q  57 tattactaactagttttatttgaacgtatttgaaagtaagtgataaatttatttgcactaaaggatg 123  Q
    |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||    
T  4177451 tattactaactagttttatttgaaagtatttgaaagtaagtgataaatttatttgcactaaaggatg 4177517  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 50 - 123
Target Start/End: Complemental strand, 4078606 - 4078533
Alignment:
Q  50 tttgttgtattactaactagttttatttgaacgtatttgaaagtaagtgataaatttatttgcactaaaggatg 123  Q
    |||||| |||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||    
T  4078606 tttgttctattgctaactagttttatttgaacgtagttgaaagtaagtgataaatttatttgcactaaaggatg 4078533  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 151 - 195
Target Start/End: Original strand, 4177539 - 4177583
Alignment:
Q  151 ataatgttacataaaagatagtatccctttatatatatagtataa 195  Q
    ||||||||||||||| |||||||||||||||||||||||||||||    
T  4177539 ataatgttacataaaggatagtatccctttatatatatagtataa 4177583  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 151 - 188
Target Start/End: Complemental strand, 4078511 - 4078474
Alignment:
Q  151 ataatgttacataaaagatagtatccctttatatatat 188  Q
    |||||||||||||||| |||||||||||||||||||||    
T  4078511 ataatgttacataaaacatagtatccctttatatatat 4078474  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University