View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF17844_low_7 (Length: 540)
Name: NF17844_low_7
Description: NF17844
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17844_low_7 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 248; Significance: 1e-137; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 248; E-Value: 1e-137
Query Start/End: Original strand, 270 - 525
Target Start/End: Complemental strand, 32266030 - 32265775
Alignment:
| Q |
270 |
tgaaaaattaaattcaatcatgaaaatatatatcgtttcttcttgaatcttctgcaaacaatcttattttcacataaatatatcataatttctagttcca |
369 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
32266030 |
tgaaaaattaaattcaatcatgaaaatatatatcgtttcttcttgaatcttctgcaaacaatcttattttcacataaatatatcataatttctagttcca |
32265931 |
T |
|
| Q |
370 |
tctatattccatatgcatgggatggttctgcatccttcaacctctttacagtcaaataggaattagagtcagaaacatatagtaaagatcagattgttaa |
469 |
Q |
| |
|
||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
|
|
| T |
32265930 |
tctatattccatatgcatggggtggttctgcatccttcaacctctttacagtcaaataggaattagagtcagaaacatatagtaaagatcagattgctaa |
32265831 |
T |
|
| Q |
470 |
tagaaggggggatgacatatttttcctatgttaaaatggagccaggggaaattttt |
525 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
32265830 |
tagaaggggggatgacatatttttcctatgttaaaatggagccaggggaaattttt |
32265775 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 236; E-Value: 1e-130
Query Start/End: Original strand, 2 - 273
Target Start/End: Complemental strand, 32268275 - 32268004
Alignment:
| Q |
2 |
ggtaatctatagttcaataataatgattgaaaaattattttttcggcgaagaattgaacgtgtgttgttctgaacaatctgtcttaaaataaaacacatt |
101 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
|
|
| T |
32268275 |
ggtaatctatagttcaataataatgattgaaaaatgattttttcggcgaagaattgaacgtgtgttgttctgaacaatttgtcttaaaataaaacacatt |
32268176 |
T |
|
| Q |
102 |
aaccacttcaactaaatctcgtattttgaaagaagagaataataaccttttaatgctggttgttttacaaatagagatggacgaaaaagttgctactttg |
201 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
|
|
| T |
32268175 |
aaccacttcaactaaatctcgtattttgaaagaagagaataataaccttttaatgctggttgttttacaaatagagatggacgaaaaagttgcaactttg |
32268076 |
T |
|
| Q |
202 |
ttgaatttataaaattatatgttttcannnnnnnncttggttcttgaattgtgatacgaaaaattacttgaa |
273 |
Q |
| |
|
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
|
|
| T |
32268075 |
ttgaatttataaaattatatgttttcattttttttcttggttcttgaattgtgatacgaaaaattacttgaa |
32268004 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University