View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17844_low_9 (Length: 525)
Name: NF17844_low_9
Description: NF17844
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17844_low_9 |
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Alignment Details
Target: chr5 (Bit Score: 431; Significance: 0; HSPs: 8)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 431; E-Value: 0
Query Start/End: Original strand, 19 - 496
Target Start/End: Complemental strand, 38173031 - 38172564
Alignment:
| Q |
19 |
aacagaatgagatttctcctatgttgtgcttgctgccaatcagttctacaattccttcggttcagcaacaaaatgagcttactcctgtagtcactgctcc |
118 |
Q |
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| T |
38173031 |
aacagaatgagatttctcctatgttgtgcttgctgccaatcagttctacaattccttcggttcagcaacaaaatgagcttactcctgtagtcactgctcc |
38172932 |
T |
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| Q |
119 |
tatggaacaacaacatgagactcctgccatcttaaacaacaaggacaatgacaacttgcaaacccagttggtgttgctttatccaatcggttctacactt |
218 |
Q |
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| T |
38172931 |
tatggaacaacaacatgagactcctgccatcttaaacaacaaggacaatgaaaacttgcaaacccagttggtgttgctttatccaatcggttctacactt |
38172832 |
T |
|
| Q |
219 |
cctgatatgaacaaacttgagaagatgtgcaacttgttggcaaaagaattttgaattagaggagttgttttgcatgagggcagtttgattttgtttgatc |
318 |
Q |
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| T |
38172831 |
cctgatatgaacaaacttgagaagatgtgcaacttgttggcaaaagaactttgaattagaggagttgttttgcatgagggcagtt----------tgatc |
38172742 |
T |
|
| Q |
319 |
tttagataggtgtctttcttgtttgagctgcttgttttggtgtatcattctttcatgtattttactttacatgacaatgtgattgtatattttaggtctt |
418 |
Q |
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| T |
38172741 |
tttagataggtgtctttcttgtttgagctgcttgttttggtgtattattctttcatgtattttactttacatgacaatgtgattgtatattttaggtctt |
38172642 |
T |
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| Q |
419 |
tctttgttcaggtacttgttttggtgtataaagcttctctttgttattagatacaaacataaatacttaatgtttcaa |
496 |
Q |
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| T |
38172641 |
tctttgttcaggtacttgttttggtgtataaagcttctctttgttattagatacaaacataaatacttaatgtttcaa |
38172564 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 305; E-Value: 1e-171
Query Start/End: Original strand, 19 - 366
Target Start/End: Original strand, 38166849 - 38167186
Alignment:
| Q |
19 |
aacagaatgagatttctcctatgttgtgcttgctgccaatcagttctacaattccttcggttcagcaacaaaatgagcttactcctgtagtcactgctcc |
118 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38166849 |
aacagaatgagatttctcctatgttgtgcttgctgccaatcagttctacaattccttcggttcagcaacaaaatgagcttactcctgtagtcactgctcc |
38166948 |
T |
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| Q |
119 |
tatggaacaacaacatgagactcctgccatcttaaacaacaaggacaatgacaacttgcaaacccagttggtgttgctttatccaatcggttctacactt |
218 |
Q |
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| T |
38166949 |
tatggaacaacaacatgagactcctgccatcttaaacaacaaggacaatgaaaacttgcaaacccagttggtgttgctttatccaatcggttctacactt |
38167048 |
T |
|
| Q |
219 |
cctgatatgaacaaacttgagaagatgtgcaacttgttggcaaaagaattttgaattagaggagttgttttgcatgagggcagtttgattttgtttgatc |
318 |
Q |
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| T |
38167049 |
cctgatatgaacaaacttgagaagatgtgcaacttgttggcaaaagaactttgaattagaggagttgttttgcatgagggca----------gtttgatc |
38167138 |
T |
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| Q |
319 |
tttagataggtgtctttcttgtttgagctgcttgttttggtgtatcat |
366 |
Q |
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| T |
38167139 |
tttagataggtgtctttcttgtttgagctgcttgttttggtgtatcat |
38167186 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 305; E-Value: 1e-171
Query Start/End: Original strand, 19 - 366
Target Start/End: Complemental strand, 38200255 - 38199918
Alignment:
| Q |
19 |
aacagaatgagatttctcctatgttgtgcttgctgccaatcagttctacaattccttcggttcagcaacaaaatgagcttactcctgtagtcactgctcc |
118 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38200255 |
aacagaatgagatttctcctatgttgtgcttgctgccaatcagttctacaattccttcggttcagcaacaaaatgagcttactcctgtagtcactgctcc |
38200156 |
T |
|
| Q |
119 |
tatggaacaacaacatgagactcctgccatcttaaacaacaaggacaatgacaacttgcaaacccagttggtgttgctttatccaatcggttctacactt |
218 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38200155 |
tatggaacaacaacatgagactcctgccatcttaaacaacaaggacaatgaaaacttgcaaacccagttggtgttgctttatccaatcggttctacactt |
38200056 |
T |
|
| Q |
219 |
cctgatatgaacaaacttgagaagatgtgcaacttgttggcaaaagaattttgaattagaggagttgttttgcatgagggcagtttgattttgtttgatc |
318 |
Q |
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| T |
38200055 |
cctgatatgaacaaacttgagaagatgtgcaacttgttggcaaaagaactttgaattagaggagttgttttgcatgagggcagtt----------tgatc |
38199966 |
T |
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| Q |
319 |
tttagataggtgtctttcttgtttgagctgcttgttttggtgtatcat |
366 |
Q |
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| T |
38199965 |
tttagataggtgtctttcttgtttgagctgcttgttttggtgtatcat |
38199918 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 66; E-Value: 6e-29
Query Start/End: Original strand, 187 - 308
Target Start/End: Original strand, 11590196 - 11590316
Alignment:
| Q |
187 |
tggtgttgctttatccaatcggttctacacttcctgatatgaacaaacttgagaagatgtgcaacttgttggcaaaagaattttgaattagaggagttgt |
286 |
Q |
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||||||| ||||||||||||||| |||||| ||||| |||||| |||||||| ||||||||||||| |||||||||||| |||||||||| |||| || |
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| T |
11590196 |
tggtgttactttatccaatcggtactacacctcctgttatgaagaaacttgaaaagatgtgcaactggttggcaaaagagctttgaattaggggagctg- |
11590294 |
T |
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| Q |
287 |
tttgcatgagggcagtttgatt |
308 |
Q |
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| T |
11590295 |
tttgcatgaggccagtttgatt |
11590316 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 195 - 256
Target Start/End: Original strand, 11484783 - 11484844
Alignment:
| Q |
195 |
ctttatccaatcggttctacacttcctgatatgaacaaacttgagaagatgtgcaacttgtt |
256 |
Q |
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| T |
11484783 |
ctttatccaatcggtactgcacttcctgatatgaacaaacttgagaagatgcgcaacttgtt |
11484844 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 304 - 363
Target Start/End: Original strand, 11590359 - 11590418
Alignment:
| Q |
304 |
tgattttgtttgatctttagataggtgtctttcttgtttgagctgcttgttttggtgtat |
363 |
Q |
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||||||||||||||||||||||||||||||||||| |||| |||||||||||||||||| |
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| T |
11590359 |
tgattttgtttgatctttagataggtgtctttctttgttgaactgcttgttttggtgtat |
11590418 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #7
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 192 - 266
Target Start/End: Original strand, 11491599 - 11491673
Alignment:
| Q |
192 |
ttgctttatccaatcggttctacacttcctgatatgaacaaacttgagaagatgtgcaacttgttggcaaaagaa |
266 |
Q |
| |
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||||||| | |||||||||||||| ||||||||| | ||||||||||||||| || |||| |||||||||||| |
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| T |
11491599 |
ttgcttttttcaatcggttctacaattcctgataaagagaaacttgagaagatgcgcgacttattggcaaaagaa |
11491673 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 19 - 52
Target Start/End: Original strand, 11491570 - 11491603
Alignment:
| Q |
19 |
aacagaatgagatttctcctatgttgtgcttgct |
52 |
Q |
| |
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|||| ||||||||||||||||||||||||||||| |
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| T |
11491570 |
aacaaaatgagatttctcctatgttgtgcttgct |
11491603 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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