View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17845_low_2 (Length: 675)
Name: NF17845_low_2
Description: NF17845
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17845_low_2 |
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Alignment Details
Target: chr3 (Bit Score: 594; Significance: 0; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 594; E-Value: 0
Query Start/End: Original strand, 15 - 628
Target Start/End: Complemental strand, 7948594 - 7947981
Alignment:
| Q |
15 |
cacagatcaaagcaaccacagcctgcaatccaacctcgacaacattatcttcgggaacaagataaacaaacaaaggacctaaaagaagcaaaacaaagct |
114 |
Q |
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| T |
7948594 |
cacagatcaaagcaaccacagcctgcaatccaacctcgacaacattatcttcgggaacaagataaacaaacaaaggacctaaaagaagcaaaacaaagct |
7948495 |
T |
|
| Q |
115 |
gagtgtgaagagtgatcctggagttgatggatcagtagcagctgataagacaccaagttcttctgcttttgaaaggagaccaagtttctctattgttgag |
214 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7948494 |
gagtgtgaagagtgatcctggagttgatggatcagtagcagctgataaaacaccaagttcttctgcttttgaaaggagaccaagtttctctattgttgag |
7948395 |
T |
|
| Q |
215 |
agagataatcctgctttctcggctgccgataataaacctgctttctctgccttggttaacagtctcagttgctccattcttgtgaggagtttaacggatt |
314 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7948394 |
agagataatcctgctttctcggctgccgataataaacctgctttctctgccttggttaacagtctcagttgctccattcttgtgaggagtttaacggatt |
7948295 |
T |
|
| Q |
315 |
gtgtcgatgttacagcactcctaggtttttccccaagtgggaatacagttgaattctgcaattgagctagtgacttagttactgtaagaaataaaacttt |
414 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
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| T |
7948294 |
gtgtcgatgttacagcactcctaggtttttccccaagtgggaatacagttgaattctgcaattgtgctagtgacttagttactgtaagaaataaaacttt |
7948195 |
T |
|
| Q |
415 |
tctccccaaaaaacaggctggttctacggtagaccacttgaaaattatcgtagagataccaatgacaaccgatgttgctcttggaagtagaaaatcgcag |
514 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| ||| |
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| T |
7948194 |
tctccccaaaaaacaggctggttctacggtagaccacttgaaaattatcgtagagataccaatgacaaccgatgttgatcttggaagtagaaaatcacag |
7948095 |
T |
|
| Q |
515 |
tcatcgttgctgtcataggtgatatggtgacttgattggtgcgtgttctaccaaaacatagaaaaacgaatatgagttgagttttgttgactcattcgtt |
614 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
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| T |
7948094 |
tcatcgttgctgtcataggtgatatggtgacttgattggtgcgtgttctaccaaaacatagaaaaacgaatatgagttgagttttgttggctcattcgtt |
7947995 |
T |
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| Q |
615 |
ttcccatatgtttt |
628 |
Q |
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|||||||||||||| |
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| T |
7947994 |
ttcccatatgtttt |
7947981 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 622 - 660
Target Start/End: Complemental strand, 7947813 - 7947775
Alignment:
| Q |
622 |
atgttttacataatgccatatttagaaatgctttgttta |
660 |
Q |
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| T |
7947813 |
atgttttacataatgccatatttagaaatgctttgttta |
7947775 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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