View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17845_low_4 (Length: 436)
Name: NF17845_low_4
Description: NF17845
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17845_low_4 |
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Alignment Details
Target: chr5 (Bit Score: 391; Significance: 0; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 391; E-Value: 0
Query Start/End: Original strand, 16 - 422
Target Start/End: Original strand, 35865032 - 35865438
Alignment:
| Q |
16 |
cactgatagtagattagttttcaaacggaagacatattcacgtagggcacatcatatggaaatatggcttaaattaaattaaatgcaacagaggtgaaat |
115 |
Q |
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| T |
35865032 |
cactgatagtagatttgttttcaaacggaagacatattcacgtagggcacatcatatggaaatatggcttaaattaaattaaatgcaactgaggtgaaat |
35865131 |
T |
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| Q |
116 |
tagcacaagtttacaagtaggtttattgaaaatattggtgtttacacgtagtcaagtgattgatatgctactcacctatcgttgtttcatttggtggagg |
215 |
Q |
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| T |
35865132 |
tagcacaagtttacaagtaggcttattgaaaatattggtgtttacacgtagtcaagtgattgatatgctactcacctatcgttgtttcatttggtggagg |
35865231 |
T |
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| Q |
216 |
tggggatggttttccaaattgagcacagtcccctgaagttccattcacgtgtgtttcttcatctccttcaaacctgtcacagcattcacaaagaaaaatg |
315 |
Q |
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| T |
35865232 |
tggggatggttttccaaattgagcacagtcccctgaagttccattcacttgtgtttcttcatctccttcaaacctgtcacagcattcacaaagaaaaatg |
35865331 |
T |
|
| Q |
316 |
agtaaatgatgctgataataaaccattttctcaagattcaagaatgagctaacaggatagatggttcattgatcctgctaacaggacacatggaaaattt |
415 |
Q |
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| T |
35865332 |
agtaaatgatgctgataataaaccattttctcaagattcaagaatgagctaacaggatagatggttcattgatcctgctaacaggacacatggaaaattt |
35865431 |
T |
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| Q |
416 |
acaactg |
422 |
Q |
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| T |
35865432 |
acaactg |
35865438 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 120; E-Value: 3e-61
Query Start/End: Original strand, 75 - 422
Target Start/End: Original strand, 34814835 - 34815208
Alignment:
| Q |
75 |
aaatatggcttaaattaaattaaatgcaacagaggtgaaattagcacaagtttacaagtaggttta-------------ttgaaaatattggtgtttaca |
161 |
Q |
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| T |
34814835 |
aaatatggcttaaattagatgaactgcaattgaggtgaaattagtacaagtttacaagtaggtttattgaaaagctttattgaaaatcttggtgtttaca |
34814934 |
T |
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| Q |
162 |
cgtagtcaagtgattgatatgctactcacctatcgttgtttcatttggtggaggtggggatggttttccaaattgagcacagtcccctgaagttccattc |
261 |
Q |
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| T |
34814935 |
agcagtcaagtgattgatatgctactcacctatctttggttcatctggtggagggggggagggtattggaaatcgagcataatcccctgaaggtacattt |
34815034 |
T |
|
| Q |
262 |
acgtgtgtttcttcatctcct------tcaaacctgtcacagcattcacaaagaaaaatgagtaaatgatgc------tgataataaaccattttctcaa |
349 |
Q |
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| T |
34815035 |
acttgtgtttcgtcatctccttcgatatcaaacctgacacagcactcacaaagacaaacgggtaaatgatgcagataataataataaatcattttctcaa |
34815134 |
T |
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| Q |
350 |
gattcaagaatgagctaacaggatagatggttcattgatcctgctaacaggacacatggaaa-atttacaactg |
422 |
Q |
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|||| ||||||||||||||||| ||||||||||||| |||||||| |||| |||||| ||| ||||||||||| |
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| T |
34815135 |
gatttgagaatgagctaacaggacagatggttcattggtcctgctagcagggcacatgaaaatatttacaactg |
34815208 |
T |
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