View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17846_high_3 (Length: 498)

Name: NF17846_high_3
Description: NF17846
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17846_high_3
NF17846_high_3
[»] chr2 (4 HSPs)
chr2 (162-490)||(13945954-13946296)
chr2 (162-490)||(14087143-14087485)
chr2 (18-162)||(13945743-13945887)
chr2 (18-162)||(14086932-14087076)
[»] chr6 (1 HSPs)
chr6 (246-284)||(27743829-27743867)


Alignment Details
Target: chr2 (Bit Score: 265; Significance: 1e-147; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 265; E-Value: 1e-147
Query Start/End: Original strand, 162 - 490
Target Start/End: Original strand, 13945954 - 13946296
Alignment:
Q  162 aaataaaaggttactgacaacgatttacttctcatgcatcacgtcgctactaaaacaaaaataaa--tcctgcccacataatcctccaacacatgatcat 259  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||  || ||||||||||||||||||||||||||||||    
T  13945954 aaataaaaggttactgacaacgatttacttctcatgcatcacgtcgctactaaaaaaaaaaaaaaaatcttgcccacataatcctccaacacatgatcat 13946053  T
Q  260 tgcctcaaactccaaatacaaaaacaatattgttcaatatggaatgttgctcacaaaatatttcgagcgtttcaacg-tcctctatt---------tgat 349  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||         ||||    
T  13946054 tgcctcaaactccaaatacaaaaacaatattgttcaatatggaatgttgctcacaaaatatttcgagcgtttcaacgttcctctatttgatgaagatgat 13946153  T
Q  350 gaaatcttgttaagtccttcacttgcaaaaatgtgagacatatgaaactcaccc--aaagactgaaaagcctgcctctcctactatctcaatggaatgtg 447  Q
    |||||||||| |||||||||||||||||||||||||||||||||||||||||||  ||||||||||||||||||||||||||||||||||||||||||||    
T  13946154 gaaatcttgtcaagtccttcacttgcaaaaatgtgagacatatgaaactcaccccaaaagactgaaaagcctgcctctcctactatctcaatggaatgtg 13946253  T
Q  448 ttagtccatgtcgttcaatgggtgcatggttgatcattcatct 490  Q
    |||||||||||||||||||||||||||||||||||||||||||    
T  13946254 ttagtccatgtcgttcaatgggtgcatggttgatcattcatct 13946296  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 265; E-Value: 1e-147
Query Start/End: Original strand, 162 - 490
Target Start/End: Original strand, 14087143 - 14087485
Alignment:
Q  162 aaataaaaggttactgacaacgatttacttctcatgcatcacgtcgctactaaaacaaaaataaa--tcctgcccacataatcctccaacacatgatcat 259  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||  || ||||||||||||||||||||||||||||||    
T  14087143 aaataaaaggttactgacaacgatttacttctcatgcatcacgtcgctactaaaaaaaaaaaaaaaatcttgcccacataatcctccaacacatgatcat 14087242  T
Q  260 tgcctcaaactccaaatacaaaaacaatattgttcaatatggaatgttgctcacaaaatatttcgagcgtttcaacg-tcctctatt---------tgat 349  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||         ||||    
T  14087243 tgcctcaaactccaaatacaaaaacaatattgttcaatatggaatgttgctcacaaaatatttcgagcgtttcaacgttcctctatttgatgaagatgat 14087342  T
Q  350 gaaatcttgttaagtccttcacttgcaaaaatgtgagacatatgaaactcaccc--aaagactgaaaagcctgcctctcctactatctcaatggaatgtg 447  Q
    |||||||||| |||||||||||||||||||||||||||||||||||||||||||  ||||||||||||||||||||||||||||||||||||||||||||    
T  14087343 gaaatcttgtcaagtccttcacttgcaaaaatgtgagacatatgaaactcaccccaaaagactgaaaagcctgcctctcctactatctcaatggaatgtg 14087442  T
Q  448 ttagtccatgtcgttcaatgggtgcatggttgatcattcatct 490  Q
    |||||||||||||||||||||||||||||||||||||||||||    
T  14087443 ttagtccatgtcgttcaatgggtgcatggttgatcattcatct 14087485  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 141; E-Value: 1e-73
Query Start/End: Original strand, 18 - 162
Target Start/End: Original strand, 13945743 - 13945887
Alignment:
Q  18 atgaaaattctcttgaagattctccaaacaaagaatctcctcgaagtcctccaagaccatggaaatcaagtgcaaaaccgacctaatctgataaatgttc 117  Q
    |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  13945743 atgaaaattctcttcaagattctccaaacaaagaatctcctcgaagtcctccaagaccatggaaatcaagtgcaaaaccgacctaatctgataaatgttc 13945842  T
Q  118 aacatcaactcataaataatctatgaattttccattgcctccaaa 162  Q
    |||||||||||||||||||||||||||||||||||||||||||||    
T  13945843 aacatcaactcataaataatctatgaattttccattgcctccaaa 13945887  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 141; E-Value: 1e-73
Query Start/End: Original strand, 18 - 162
Target Start/End: Original strand, 14086932 - 14087076
Alignment:
Q  18 atgaaaattctcttgaagattctccaaacaaagaatctcctcgaagtcctccaagaccatggaaatcaagtgcaaaaccgacctaatctgataaatgttc 117  Q
    |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  14086932 atgaaaattctcttcaagattctccaaacaaagaatctcctcgaagtcctccaagaccatggaaatcaagtgcaaaaccgacctaatctgataaatgttc 14087031  T
Q  118 aacatcaactcataaataatctatgaattttccattgcctccaaa 162  Q
    |||||||||||||||||||||||||||||||||||||||||||||    
T  14087032 aacatcaactcataaataatctatgaattttccattgcctccaaa 14087076  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 246 - 284
Target Start/End: Complemental strand, 27743867 - 27743829
Alignment:
Q  246 caacacatgatcattgcctcaaactccaaatacaaaaac 284  Q
    ||||||||||||||||||||||| |||||||||||||||    
T  27743867 caacacatgatcattgcctcaaattccaaatacaaaaac 27743829  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University