View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17846_high_5 (Length: 467)
Name: NF17846_high_5
Description: NF17846
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17846_high_5 |
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Alignment Details
Target: chr4 (Bit Score: 315; Significance: 1e-177; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 315; E-Value: 1e-177
Query Start/End: Original strand, 1 - 449
Target Start/End: Complemental strand, 32037272 - 32036825
Alignment:
| Q |
1 |
tgtctacaaagctatttatttttcccattttgcaaactcnnnnnnnncataataaagtttgaatattttaaaagactttaacggtggaaaaatacatttt |
100 |
Q |
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||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32037272 |
tgtctacaaagctatttatttttcccattttgcaatctcttttttt-cataataaagtttgaatattttaaaagactttaacggtggaaaaatacatttt |
32037174 |
T |
|
| Q |
101 |
ctttctagttaacctgtatctctcaattcatctacccagtcccaaacctttgaatccatgcacacaattaaaaaactgagaaaaggaacttttttctata |
200 |
Q |
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|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
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| T |
32037173 |
ctttctagttaacctggatctctcaattcatctacccagtcccaaacctttgaatccatgcacacaattaaaaaactgagaaaaggaacatttttctata |
32037074 |
T |
|
| Q |
201 |
attttcattgaaatcttcaaaacattcaattnnnnnnnnnnnnnntaagattttttcccacttgaatgtgaataaaaatgcatcaaccttctttctgatt |
300 |
Q |
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||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32037073 |
attttcattgaaatcttcaaaacattcaattaaaaaaacaaaaaataagattttttcccacttgaatgtgaataaaaatgcatcaaccttctttctgatt |
32036974 |
T |
|
| Q |
301 |
ttcctccgatttgatcctttctttccattctcattggatctttaccttgttattcaattcttctacttnnnnnnnnnnnnnnnnntcgttatttttctct |
400 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
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| T |
32036973 |
ttcctccgatttgatcctttctttccattctcattggatctttaccttgttattcaattcttctacttaaaaaatataaaaaaaatcgttatttttctct |
32036874 |
T |
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| Q |
401 |
gattattgaagagcttcaaattgtgtggacacaatttggtggcataaag |
449 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32036873 |
gattattgaagagcttcaaattgtgtggacacaatttggtggcataaag |
32036825 |
T |
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