View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17846_high_9 (Length: 290)
Name: NF17846_high_9
Description: NF17846
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17846_high_9 |
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Alignment Details
Target: chr4 (Bit Score: 274; Significance: 1e-153; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 274; E-Value: 1e-153
Query Start/End: Original strand, 1 - 274
Target Start/End: Complemental strand, 17441747 - 17441474
Alignment:
| Q |
1 |
tatacttctgcagaattcaataaattttgtgatgatttgggtgttgaacgtcaacttacagtcagctactcgcctcaacagaacggagtttctgaaagaa |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
17441747 |
tatacttctgcagaattcaataaattttgtgatgatttgggtgttgaacgtcaacttacagtcagctactcgcctcaacagaacggagtttctgaaagaa |
17441648 |
T |
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| Q |
101 |
agaatagatctgtccttgaaatggctagatgcatgatttttgagaagaaattgccaaagtccttctgggcagaggcaataaacactgctgtctatctcca |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
17441647 |
agaatagatctgtccttgaaatggctagatgcatgatttttgagaagaaattgccaaagtccttctgggcagaggcaataaacactgctgtctatctcca |
17441548 |
T |
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| Q |
201 |
aaatcgacttcctacaaaggcggtagaagggatgacacctattgaggcttggggaggcttcaagccgtctatca |
274 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
17441547 |
aaatcgacttcctacaaaggcggtagaagggatgacacctattgaggcttggggaggcttcaagccgtctatca |
17441474 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 270; Significance: 1e-151; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 270; E-Value: 1e-151
Query Start/End: Original strand, 1 - 274
Target Start/End: Original strand, 4875096 - 4875369
Alignment:
| Q |
1 |
tatacttctgcagaattcaataaattttgtgatgatttgggtgttgaacgtcaacttacagtcagctactcgcctcaacagaacggagtttctgaaagaa |
100 |
Q |
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||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4875096 |
tatacttctacagaattcaataaattttgtgatgatttgggtgttgaacgtcaacttacagtcagctactcgcctcaacagaacggagtttctgaaagaa |
4875195 |
T |
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| Q |
101 |
agaatagatctgtccttgaaatggctagatgcatgatttttgagaagaaattgccaaagtccttctgggcagaggcaataaacactgctgtctatctcca |
200 |
Q |
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| T |
4875196 |
agaatagatctgtccttgaaatggctagatgcatgatttttgagaagaaattgccaaagtccttctgggcagaggcaataaacactgctgtctatctcca |
4875295 |
T |
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| Q |
201 |
aaatcgacttcctacaaaggcggtagaagggatgacacctattgaggcttggggaggcttcaagccgtctatca |
274 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4875296 |
aaatcgacttcctacaaaggcggtagaagggatgacacctattgaggcttggggaggcttcaagccgtctatca |
4875369 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 93; E-Value: 3e-45
Query Start/End: Original strand, 146 - 258
Target Start/End: Original strand, 30188077 - 30188189
Alignment:
| Q |
146 |
agaaattgccaaagtccttctgggcagaggcaataaacactgctgtctatctccaaaatcgacttcctacaaaggcggtagaagggatgacacctattga |
245 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||| |||||| |||||||||||||||| |
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| T |
30188077 |
agaaattgccaaagtccttctgggcagaggcaataaacactgctgtatatctccaaaatcaacttcctacaaaggctgtagaaaggatgacacctattga |
30188176 |
T |
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| Q |
246 |
ggcttggggaggc |
258 |
Q |
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|||||| |||||| |
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| T |
30188177 |
ggcttgtggaggc |
30188189 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 266; Significance: 1e-148; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 266; E-Value: 1e-148
Query Start/End: Original strand, 1 - 274
Target Start/End: Original strand, 3060453 - 3060726
Alignment:
| Q |
1 |
tatacttctgcagaattcaataaattttgtgatgatttgggtgttgaacgtcaacttacagtcagctactcgcctcaacagaacggagtttctgaaagaa |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3060453 |
tatacttctgcagaattcaataaattttgtgatgatttgggtgttgaacgtcaacttacagtcagctactcgcctcaacagaacggagtttctgaaagaa |
3060552 |
T |
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| Q |
101 |
agaatagatctgtccttgaaatggctagatgcatgatttttgagaagaaattgccaaagtccttctgggcagaggcaataaacactgctgtctatctcca |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3060553 |
agaatagatctgtccttgaaatggctagatgcatgatttttgagaagaaattgccaaagtccttctgggcagaggcaataaacactgctgtctatctcca |
3060652 |
T |
|
| Q |
201 |
aaatcgacttcctacaaaggcggtagaagggatgacacctattgaggcttggggaggcttcaagccgtctatca |
274 |
Q |
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||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
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| T |
3060653 |
aaatcaacttcctacaaaggcggtagaagggatgacacctattgaggcttggggaggtttcaagccgtctatca |
3060726 |
T |
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