View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17846_low_1 (Length: 724)

Name: NF17846_low_1
Description: NF17846
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17846_low_1
NF17846_low_1
[»] chr2 (5 HSPs)
chr2 (11-219)||(3776250-3776458)
chr2 (438-636)||(3776685-3776883)
chr2 (284-390)||(3776523-3776629)
chr2 (12-196)||(3807957-3808150)
chr2 (284-354)||(3808266-3808337)
[»] chr3 (2 HSPs)
chr3 (441-676)||(43246287-43246525)
chr3 (566-613)||(30729512-30729559)
[»] chr5 (3 HSPs)
chr5 (459-676)||(1808201-1808421)
chr5 (439-654)||(7861785-7862000)
chr5 (454-654)||(14623907-14624110)
[»] chr4 (4 HSPs)
chr4 (439-674)||(48543837-48544076)
chr4 (19-152)||(35364923-35365059)
chr4 (457-622)||(45826042-45826209)
chr4 (19-97)||(35373097-35373175)
[»] chr8 (1 HSPs)
chr8 (452-654)||(11195960-11196171)
[»] chr6 (1 HSPs)
chr6 (455-676)||(8194516-8194741)
[»] chr1 (1 HSPs)
chr1 (453-535)||(31416075-31416157)
[»] chr7 (2 HSPs)
chr7 (578-648)||(35407185-35407255)
chr7 (452-497)||(35405817-35405862)


Alignment Details
Target: chr2 (Bit Score: 205; Significance: 1e-111; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 205; E-Value: 1e-111
Query Start/End: Original strand, 11 - 219
Target Start/End: Original strand, 3776250 - 3776458
Alignment:
Q  11 agcataggtacatgcaagctaaatggttaggtccatgtgaaaggaacacttcaacaactcctcttccaatgggaaattctgagaggataataacaaagcc 110  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3776250 agcataggtacatgcaagctaaatggttaggtccatgtgaaaggaacacttcaacaactcctcttccaatgggaaattctgagaggataataacaaagcc 3776349  T
Q  111 aaaatcaaaggcatctatgttgactattgatttattagagaagcttccaacattgcattgcacagctgttaaggttgtgtgattgtaaaaaagatgatca 210  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||    
T  3776350 aaaatcaaaggcatctatgttgactattgatttattagagaagcttccaacattgcattgcactgctgttaaggttgtgtgattgtaaaaaagatgatca 3776449  T
Q  211 atttaatta 219  Q
    |||||||||    
T  3776450 atttaatta 3776458  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 147; E-Value: 4e-77
Query Start/End: Original strand, 438 - 636
Target Start/End: Original strand, 3776685 - 3776883
Alignment:
Q  438 taagagactactcaccgcgatgataagcaacactcatactgtctgtcgtaagcaataaacgaagtccagccgaagggtcaagcacaatcaatatatcact 537  Q
    |||||||||||| |||||||||||||||||||| |||||||||||  ||||||||||| ||||| |||||||||||||||||||| ||||||||||||||    
T  3776685 taagagactactgaccgcgatgataagcaacacccatactgtctgctgtaagcaataagcgaagcccagccgaagggtcaagcacgatcaatatatcact 3776784  T
Q  538 cataaactttgttctaagtttgactaagtcagcacacatgttaccctccgtgagagtgtgacatagttaaaaagtctaatctttaaccatgtactctct 636  Q
    ||||||| |||||||||| |||||||||||||||||||||||||||||||||||| |||||||||||| |||| ||||||||||| |||||||||||||    
T  3776785 cataaaccttgttctaagcttgactaagtcagcacacatgttaccctccgtgagaatgtgacatagttgaaaaatctaatctttagccatgtactctct 3776883  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 103; E-Value: 7e-51
Query Start/End: Original strand, 284 - 390
Target Start/End: Original strand, 3776523 - 3776629
Alignment:
Q  284 ggttaaaattaaggagtgagtgacttgcaaatgtcacaccccacatacttgtatgtaaatcgccaatatttgaatagatagagataaatgtgcggaacga 383  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||    
T  3776523 ggttaaaattaaggagtgagtgacttgcaaatgtcacaccccacatacttgtatgtaaatcgccaatatttgaatagatagagataaacgtgcggaacga 3776622  T
Q  384 agttttg 390  Q
    |||||||    
T  3776623 agttttg 3776629  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 80; E-Value: 4e-37
Query Start/End: Original strand, 12 - 196
Target Start/End: Original strand, 3807957 - 3808150
Alignment:
Q  12 gcataggtacatgcaagctaaatggttaggtccatgtgaaaggaacacttcaacaa---ctcctcttccaatgggaaa---ttctgagaggataataaca 105  Q
    ||||| ||||||| ||||||||||||||||||||||||||||| || |||||||||   |||| ||| | || |||     |||||||||||| ||||||    
T  3807957 gcataagtacatggaagctaaatggttaggtccatgtgaaaggtacccttcaacaaagtctccactttctattggatcattttctgagaggatcataaca 3808056  T
Q  106 aagccaaaatcaaaggcatctatgttgactattgatttattagagaagcttccaacattgcattgcacagctgt---taaggttgtgtgattgt 196  Q
    |||| ||||||||||| |||||||||||||||||| ||||| || ||||||||||||||||||||| |||||||   | |||||||||||||||    
T  3808057 aagcaaaaatcaaaggtatctatgttgactattgaattatttgataagcttccaacattgcattgcccagctgttgatgaggttgtgtgattgt 3808150  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 48; E-Value: 5e-18
Query Start/End: Original strand, 284 - 354
Target Start/End: Original strand, 3808266 - 3808337
Alignment:
Q  284 ggttaaaattaaggagtgagtgacttgcaaatgtcacaccccacatac-ttgtatgtaaatcgccaatattt 354  Q
    ||||| || |||| ||||||||||||||| |||||||||||||||||| |||||||||||||||||||||||    
T  3808266 ggttagaactaagtagtgagtgacttgcatatgtcacaccccacatactttgtatgtaaatcgccaatattt 3808337  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 90; Significance: 4e-43; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 90; E-Value: 4e-43
Query Start/End: Original strand, 441 - 676
Target Start/End: Complemental strand, 43246525 - 43246287
Alignment:
Q  441 gagactactcaccgcgatgataagcaacactcatactgtctgtcgtaagcaataaacgaagtccagccgaagggtcaagcacaatcaatatatcactcat 540  Q
    |||||||||  |||||||||||||||||||||||| |||||| |||||||||| |||||||  |||| | ||| | |||||||| ||||| ||||||| |    
T  43246525 gagactactgcccgcgatgataagcaacactcatattgtctgccgtaagcaatgaacgaagctcagctggaggattaagcacaaacaatagatcactcgt 43246426  T
Q  541 aaactttgttctaagtttgactaag---tcagcacacatgttaccctccgtgagagtgtgacatagttaaaaagtctaatctttaaccatgtactctcta 637  Q
    | || |||||| ||| ||| |||||   ||||||||||| ||| ||||| |||||||||||||||||| ||||||| |||||||| ||||||||| ||||    
T  43246425 agaccttgttccaagcttggctaagaaatcagcacacatattatcctcc-tgagagtgtgacatagttgaaaagtccaatctttagccatgtactttcta 43246327  T
Q  638 ataatagctatttca-ttctataatgatgagtggaaacat 676  Q
    || |||||||| ||| ||| ||| || |||||||||||||    
T  43246326 atgatagctatctcatttccatagtggtgagtggaaacat 43246287  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 566 - 613
Target Start/End: Complemental strand, 30729559 - 30729512
Alignment:
Q  566 tcagcacacatgttaccctccgtgagagtgtgacatagttaaaaagtc 613  Q
    ||||||||||| ||||||||| |||||||||||||||||| |||||||    
T  30729559 tcagcacacatattaccctccatgagagtgtgacatagttgaaaagtc 30729512  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 84; Significance: 2e-39; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 84; E-Value: 2e-39
Query Start/End: Original strand, 459 - 676
Target Start/End: Complemental strand, 1808421 - 1808201
Alignment:
Q  459 gataagcaacactcatactgtctgtcgtaagcaataaacgaagtccagccgaagggtcaagcacaatcaatatatcactcataaactttgttctaagttt 558  Q
    |||||||||||||||||||||||  ||||||||||||||||||  || | | ||||| |||||| ||||||| |||||||  | || |||||| ||||||    
T  1808421 gataagcaacactcatactgtctaccgtaagcaataaacgaagctcaactggagggttaagcacgatcaatacatcactcgcagaccttgttccaagttt 1808322  T
Q  559 gact---aagtcagcacacatgttaccctccgtgagagtgtgacatagttaaaaagtctaatctttaaccatgtactctctaataatagctatttca-tt 654  Q
    | ||   |||||||||||||| ||||||||  |||||||||||||||||| ||||||  |||||||| ||||| ||| ||||||||||||||| ||| ||    
T  1808321 ggctaagaagtcagcacacatattaccctctctgagagtgtgacatagttgaaaagttcaatctttagccatg-actttctaataatagctatctcattt 1808223  T
Q  655 ctataatgatgagtggaaacat 676  Q
    | |||||| |||||||||||||    
T  1808222 ccataatggtgagtggaaacat 1808201  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 60; E-Value: 3e-25
Query Start/End: Original strand, 439 - 654
Target Start/End: Original strand, 7861785 - 7862000
Alignment:
Q  439 aagagactactcaccgcgatgataagcaacactcatactgtctgtcgtaagcaataaacgaagtccagccgaagggtcaagcacaatcaatatatcactc 538  Q
    |||||||||||  ||| |||||||| |||||  ||||||||||| ||||||||||||||||||  |||  |  |||| |||||| |||||||  |||||     
T  7861785 aagagactactagccgtgatgataaacaacatccatactgtctgccgtaagcaataaacgaagctcagttggcgggttaagcacgatcaataagtcacta 7861884  T
Q  539 ataaactttgttctaagtttgactaagtcagcacacatgttaccctccgtgagagtgtgacatagttaaaaagtctaatctttaaccatgtactctctaa 638  Q
     || || |||||  ||| ||| ||| |  | |||| || ||||||||| |||||||||||||||||| ||||||| ||||||||  |||||||| |||||    
T  7861885 ttagaccttgtttcaagcttggctatgaaatcacatatattaccctccttgagagtgtgacatagttgaaaagtccaatctttagtcatgtactttctaa 7861984  T
Q  639 taatagctatttcatt 654  Q
    |||||| ||| |||||    
T  7861985 taatagttatctcatt 7862000  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 454 - 654
Target Start/End: Original strand, 14623907 - 14624110
Alignment:
Q  454 gcgatgataagcaacactcatactgtctgtcgtaagcaataaacgaagtccagccgaagggtcaagcacaatcaatatatcactcataaactttgttcta 553  Q
    ||||||||||||||||| |||||| ||||     ||||||||| |||| ||||| | ||||| |||||||||||| | || |||| || || || |   |    
T  14623907 gcgatgataagcaacacccatactatctgcttcgagcaataaaggaagcccagctggagggttaagcacaatcaaaagattactcgtacaccttttatca 14624006  T
Q  554 agtttgactaag---tcagcacacatgttaccctccgtgagagtgtgacatagttaaaaagtctaatctttaaccatgtactctctaataatagctattt 650  Q
    ||||||  ||||   ||| ||||||| ||||||||| ||||| |||||||||||| ||||||| |||| |||  |||||||| ||||||||||||||| |    
T  14624007 agtttggttaagaagtcaacacacatattaccctccctgagaatgtgacatagttgaaaagtccaatcgttagtcatgtactttctaataatagctatct 14624106  T
Q  651 catt 654  Q
    ||||    
T  14624107 catt 14624110  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 82; Significance: 2e-38; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 82; E-Value: 2e-38
Query Start/End: Original strand, 439 - 674
Target Start/End: Complemental strand, 48544076 - 48543837
Alignment:
Q  439 aagagactactcaccgcgatgataagcaacactcatactgtctgtcgtaagcaataaacgaagtccagccgaagggtcaagcacaatcaatatatcactc 538  Q
    ||||||||||   ||||||||||||||||||| |||| |||||| ||||| ||||||||||||  |||| || |||| || ||||||||||| |||||||    
T  48544076 aagagactaccggccgcgatgataagcaacacccatattgtctgccgtaaacaataaacgaagctcagctgacgggttaaacacaatcaatagatcactc 48543977  T
Q  539 ataaactttgttctaagtttgact---aagtcagcacacatgttaccctccgtgagagtgtgacatagttaaaaagtctaatctttaaccatgtactctc 635  Q
     || || |||||| ||| ||  ||   |||||||||||||| |||| |||| |||||||||||||||||| ||||||| ||| |||||||||||||| |     
T  48543976 gtagaccttgttccaagctttgctaagaagtcagcacacatattactctccctgagagtgtgacatagttgaaaagtccaatatttaaccatgtacttta 48543877  T
Q  636 taataatagctatttcattct-ataatgatgagtggaaac 674  Q
     |||||||||||| ||||| | ||| || |||||||||||    
T  48543876 caataatagctatctcattttcatagtggtgagtggaaac 48543837  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 19 - 152
Target Start/End: Complemental strand, 35365059 - 35364923
Alignment:
Q  19 tacatgcaagctaaatggttaggtccatgtgaaaggaacacttcaacaactcctcttccaatgggaaattctgagagg-ataataa--caaagccaaaat 115  Q
    |||||||||||||||||||||||||||| | |||||||||||||||||| | | ||| || ||||| ||||||||||| ||| |||  ||||||  ||      
T  35365059 tacatgcaagctaaatggttaggtccatttaaaaggaacacttcaacaaattcactttcattgggatattctgagaggaatattaatccaaagcagaagc 35364960  T
Q  116 caaaggcatctatgttgactattgatttattagagaa 152  Q
    |||||||||| ||||| || |||||||||||||||||    
T  35364959 caaaggcatcaatgttaaccattgatttattagagaa 35364923  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 457 - 622
Target Start/End: Complemental strand, 45826209 - 45826042
Alignment:
Q  457 atgataagcaacactcatactgtctgtcgtaagcaataaacgaag-tccagccgaagggtcaagcacaatcaatatatcactcataaactttgttctaag 555  Q
    |||||||||||||||||||||||| |||||||||||||||||||| || |  || ||||| |||||||||||||| || |||  || || |||| | |||    
T  45826209 atgataagcaacactcatactgtccgtcgtaagcaataaacgaagctcaattcg-agggttaagcacaatcaataaattacttgtagac-ttgtaccaag 45826112  T
Q  556 tttgactaa---gtcagcacacatgttaccctccgtgagagtgtgacatagttaaaaagtctaatcttta 622  Q
    |||| ||||   ||||||| |||| ||||| ||  |||||||||||||||||| ||||||| ||||||||    
T  45826111 tttggctaagatgtcagcatacatattaccgtctctgagagtgtgacatagttgaaaagtccaatcttta 45826042  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 19 - 97
Target Start/End: Complemental strand, 35373175 - 35373097
Alignment:
Q  19 tacatgcaagctaaatggttaggtccatgtgaaaggaacacttcaacaactcctcttccaatgggaaattctgagagga 97  Q
    |||||||||||||||||||||||||||| | |||||||||||||||||| | | ||| || ||||| ||||||||||||    
T  35373175 tacatgcaagctaaatggttaggtccatttaaaaggaacacttcaacaaattcactttcattgggatattctgagagga 35373097  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 55; Significance: 3e-22; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 452 - 654
Target Start/End: Original strand, 11195960 - 11196171
Alignment:
Q  452 ccgcgatgataagcaacactcatactgtctgtcgtaagcaataaacgaagtccagccgaagggtcaagcacaatcaatatatcactcataaactttgttc 551  Q
    |||||||||||| ||| ||  ||| |||||| ||||||||||||||||| | ||||   ||||| |||||| ||| | | ||||||| || |||||||||    
T  11195960 ccgcgatgataaacaaaacctatattgtctgccgtaagcaataaacgaaattcagcgagagggttaagcacgatctagagatcactcgtagactttgttc 11196059  T
Q  552 taagtttgact---aagtcagcacacatgttaccctccgtgag------agtgtgacatagttaaaaagtctaatctttaaccatgtactctctaataat 642  Q
     ||| ||| ||   |||||||||||||| ||||||||| ||||      |||||||||||||||||| ||| || ||||| ||||||||| | |||||||    
T  11196060 caagcttggctgaaaagtcagcacacatattaccctccctgagactgagagtgtgacatagttaaaatgtccaaactttagccatgtactttttaataat 11196159  T
Q  643 agctatttcatt 654  Q
    |||||| |||||    
T  11196160 agctatctcatt 11196171  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 52; Significance: 2e-20; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 455 - 676
Target Start/End: Original strand, 8194516 - 8194741
Alignment:
Q  455 cgatgataagcaacactcatactgtctgtcgtaagcaataaacgaagtccagccgaagggtcaagcacaatcaatatatcactcataaactttgttctaa 554  Q
    |||||||||||||||   ||| ||||||  |||||||| ||||||||  |||||  ||| |||| ||||||||| | ||||||  || || |||||| ||    
T  8194516 cgatgataagcaacatagatattgtctgctgtaagcaacaaacgaagctcagccagaggatcaaacacaatcaaaagatcactagtagaccttgttccaa 8194615  T
Q  555 gtttgactaa---gtcagcacacatgttaccctccgtgagagtgtgacatagttaaaaagtctaatctttaaccatgtactctctaataatagctatttc 651  Q
    | ||  ||||   |||||||||||| ||||||||  | |||||||||||||| | ||||||| |||||||  ||||||||| ||| ||||||||||| ||    
T  8194616 gctttgctaaaaagtcagcacacatattaccctctctaagagtgtgacatagattaaaagtccaatcttttgccatgtactttctgataatagctatctc 8194715  T
Q  652 att-ctataatgatgagtggaaacat 676  Q
    ||| | |||||| |||||| ||||||    
T  8194716 attaccataatggtgagtgaaaacat 8194741  T

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Target: chr1 (Bit Score: 43; Significance: 0.000000000000005; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 453 - 535
Target Start/End: Original strand, 31416075 - 31416157
Alignment:
Q  453 cgcgatgataagcaacactcatactgtctgtcgtaagcaataaacgaagtccagccgaagggtcaagcacaatcaatatatca 535  Q
    |||||||||||||||||| ||||||||||| ||||||||||||||||||  |  | ||||| | |||||||||||||| ||||    
T  31416075 cgcgatgataagcaacacccatactgtctgccgtaagcaataaacgaagctcgactgaaggattaagcacaatcaatagatca 31416157  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 35; Significance: 0.0000000003; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 578 - 648
Target Start/End: Original strand, 35407185 - 35407255
Alignment:
Q  578 ttaccctccgtgagagtgtgacatagttaaaaagtctaatctttaaccatgtactctctaataatagctat 648  Q
    |||| |||| |||||||||||||||||| |||| || ||| ||||  |||||||| |||||||||||||||    
T  35407185 ttactctccatgagagtgtgacatagttgaaaaatccaatatttagtcatgtactttctaataatagctat 35407255  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 452 - 497
Target Start/End: Original strand, 35405817 - 35405862
Alignment:
Q  452 ccgcgatgataagcaacactcatactgtctgtcgtaagcaataaac 497  Q
    |||||||||||| |||||| |||||| |||| ||||||||||||||    
T  35405817 ccgcgatgataaacaacacccatactatctgccgtaagcaataaac 35405862  T

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