View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17846_low_11 (Length: 287)
Name: NF17846_low_11
Description: NF17846
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17846_low_11 |
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Alignment Details
Target: chr8 (Bit Score: 153; Significance: 4e-81; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 153; E-Value: 4e-81
Query Start/End: Original strand, 10 - 268
Target Start/End: Complemental strand, 15137335 - 15137067
Alignment:
| Q |
10 |
agaagcaaaggacacttgtaagaaaaacagaagacaagagaaagatgctttattatgagtttgtggctgaaaatgttttggtgctaaggtttgtggtcta |
109 |
Q |
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| T |
15137335 |
agaagcaatggacacttgtaagaaaaacagaagacaagagaaagatgctttattatgagtttgtggctgaaaatgttttggtgctaaggtttgtggtcta |
15137236 |
T |
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| Q |
110 |
aagctctccatctaaatcttgaatcttattggaacatgtggatttgtgggtccctttttacatcatttcgtggtctgtaatgaaagataccagttgcttc |
209 |
Q |
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| T |
15137235 |
aagttctccatctaaatctgatttgttattggtacacgtggatttgtgggtccaacttttgatgatttcgtggtctgtaatgaaagataccatttacttc |
15137136 |
T |
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| Q |
210 |
atagacaag---tttttgttagatatgc-------tttgaaaatcacgttctcaataagcacttgtgta |
268 |
Q |
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| T |
15137135 |
atagacaagttatttctattagatatgctttgaagtttgaaaatcacgttctcaataagcacttgtgta |
15137067 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 66 - 164
Target Start/End: Complemental strand, 15135600 - 15135500
Alignment:
| Q |
66 |
gagtttgtggctgaaaatgttttggtgctaag--gtttgtggtctaaagctctccatctaaatcttgaatcttattggaacatgtggatttgtgggtccc |
163 |
Q |
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| T |
15135600 |
gagtttgtggctgaaaatgttttggtgcaaagatttttgtgatctaaagctcaccatctaaatctgaaatactattgcgccacgtggatttgtgggtccc |
15135501 |
T |
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| Q |
164 |
t |
164 |
Q |
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| T |
15135500 |
t |
15135500 |
T |
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