View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17846_low_12 (Length: 268)
Name: NF17846_low_12
Description: NF17846
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17846_low_12 |
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Alignment Details
Target: chr3 (Bit Score: 111; Significance: 4e-56; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 111; E-Value: 4e-56
Query Start/End: Original strand, 100 - 229
Target Start/End: Complemental strand, 35261204 - 35261072
Alignment:
| Q |
100 |
aatatcatatgtaaatcaaagtaaagacttggccatctaaaatcctacccttccaaaatctcctctcaaagagactct---ttgtcagtctcctagtgta |
196 |
Q |
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| T |
35261204 |
aatatcatatgtaaatcaaagtaaagacttggccatctaaaatcctccccttcaaaaatctcctctcaaagagactcttagttgtcagtctcctagtgta |
35261105 |
T |
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| Q |
197 |
ggtcacatttctaacccatgcattcttaggtcc |
229 |
Q |
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| T |
35261104 |
ggtcacatttctaacccatgcattcttaggtcc |
35261072 |
T |
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Target: chr3; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 1 - 34
Target Start/End: Complemental strand, 35261303 - 35261270
Alignment:
| Q |
1 |
tggagcgtttagaaggagattatgaatgctataa |
34 |
Q |
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| T |
35261303 |
tggagcgtttagaaggagattatgaatgctataa |
35261270 |
T |
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