View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17846_low_15 (Length: 243)
Name: NF17846_low_15
Description: NF17846
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17846_low_15 |
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Alignment Details
Target: chr3 (Bit Score: 158; Significance: 3e-84; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 158; E-Value: 3e-84
Query Start/End: Original strand, 15 - 180
Target Start/End: Complemental strand, 35261559 - 35261394
Alignment:
| Q |
15 |
agtatatactaataatttagtttgttagcatgattatgacaaagacggaaagaagtgaggaatttgacaaaaggactattatttatcaaatgaaatatat |
114 |
Q |
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| T |
35261559 |
agtatatactaataatttagtttgttagcatgattatgacaaagacggaaagaagtgaggaatttgacaaaaggactattatttatcaaatcaaatatat |
35261460 |
T |
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| Q |
115 |
taaactgcaaaaagactaacttagaagtccttttctgcttattctctcaaacaattgttttaacag |
180 |
Q |
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| T |
35261459 |
taaactgcaaaaagactaacttagaagtccttttctgcttattctttcaaacaattgttttaacag |
35261394 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 198 - 234
Target Start/End: Complemental strand, 35261376 - 35261340
Alignment:
| Q |
198 |
gaacacaatgtaattagaccgattatgaaacaaattt |
234 |
Q |
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| T |
35261376 |
gaacacaatgtaattagaccgattatgaaactaattt |
35261340 |
T |
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