View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17846_low_19 (Length: 203)
Name: NF17846_low_19
Description: NF17846
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17846_low_19 |
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Alignment Details
Target: chr2 (Bit Score: 141; Significance: 4e-74; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 141; E-Value: 4e-74
Query Start/End: Original strand, 18 - 162
Target Start/End: Original strand, 13945743 - 13945887
Alignment:
| Q |
18 |
atgaaaattctcttgaagattctccaaacaaagaatctcctcgaagtcctccaagaccatggaaatcaagtgcaaaaccgacctaatctgataaatgttc |
117 |
Q |
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| T |
13945743 |
atgaaaattctcttcaagattctccaaacaaagaatctcctcgaagtcctccaagaccatggaaatcaagtgcaaaaccgacctaatctgataaatgttc |
13945842 |
T |
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| Q |
118 |
aacatcaactcataaataatctatgaattttccattgcctccaaa |
162 |
Q |
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| T |
13945843 |
aacatcaactcataaataatctatgaattttccattgcctccaaa |
13945887 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 141; E-Value: 4e-74
Query Start/End: Original strand, 18 - 162
Target Start/End: Original strand, 14086932 - 14087076
Alignment:
| Q |
18 |
atgaaaattctcttgaagattctccaaacaaagaatctcctcgaagtcctccaagaccatggaaatcaagtgcaaaaccgacctaatctgataaatgttc |
117 |
Q |
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|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
14086932 |
atgaaaattctcttcaagattctccaaacaaagaatctcctcgaagtcctccaagaccatggaaatcaagtgcaaaaccgacctaatctgataaatgttc |
14087031 |
T |
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| Q |
118 |
aacatcaactcataaataatctatgaattttccattgcctccaaa |
162 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
14087032 |
aacatcaactcataaataatctatgaattttccattgcctccaaa |
14087076 |
T |
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