View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17846_low_2 (Length: 597)
Name: NF17846_low_2
Description: NF17846
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17846_low_2 |
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Alignment Details
Target: chr4 (Bit Score: 550; Significance: 0; HSPs: 5)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 550; E-Value: 0
Query Start/End: Original strand, 16 - 585
Target Start/End: Complemental strand, 54904305 - 54903736
Alignment:
| Q |
16 |
caattttgagacaccaatgttttctgaaagtgaaagttcgagttccgtacatggcattcaaacgtcaatggacatcaaccagtttcagcagaatatttat |
115 |
Q |
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|||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
54904305 |
caatttcgagacaccaatgttttctgaaagtgaaagttcgagttctgtacatggcattcaaacgtcaatggacatcaaccagtttcagcagaatatttat |
54904206 |
T |
|
| Q |
116 |
ctgcctgataacattaatttaagtccaattgatgattcaaatgcagttacagattcctctagcttccaagacatcggagccactgtcaataatgcaaatg |
215 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
54904205 |
ctgcctgataacattaatttaagtccaattgatgattcaaatgcagttacagattcctctagcttccaagacatcggagccactgtcaataatgcaaatg |
54904106 |
T |
|
| Q |
216 |
tttctctttcttgcatctcaagcaatcacatacaaacacataaatcagtagcatttatcaatcactctcatgttgaaggtgctgctgtgacaacacaatc |
315 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||| |
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| T |
54904105 |
tttctctttcttgcatctcaagcaatcacatacaaacacataaatcaggagcatttatcaatcactctcatgttgaaggtgctgctgtgaaaacacaatc |
54904006 |
T |
|
| Q |
316 |
ttttaaccccgtcacaagtggttcctctaactttgcttccaattctgttccattgagtgaggattttaacaatgatcaaatgttgcacaataactttaag |
415 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
54904005 |
ttttaaccccgtcacaagtggttcctctaactttgcttccaattctgttccattgagtgaggattttaacaatgatcaaatgttgcacaataactttaag |
54903906 |
T |
|
| Q |
416 |
tttgcttctcccagttctcatttttcttcgacagacatggttgctgttcctttggaggaaacaatgcaatgtcaagatggcttacttgggaatgttataa |
515 |
Q |
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|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
54903905 |
tttgcttctcccagttctcatttttcttcgacagacattgttgctgttcctttggaggaaacaatgcaatgtcaagatggcttacttgggaatgttataa |
54903806 |
T |
|
| Q |
516 |
atgctccatggtacacacaacatcaaaatgcgagttcttccttcaacaataccttggattatcttgcttc |
585 |
Q |
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|
| T |
54903805 |
atgctccatggtacacacaacatcaaaatgcgagttcttccttcaacaataccttggattatcttgcttc |
54903736 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 145; E-Value: 5e-76
Query Start/End: Original strand, 76 - 575
Target Start/End: Complemental strand, 54888123 - 54887603
Alignment:
| Q |
76 |
aacgtcaatggacatcaaccagtttcagcagaatatttatctgcctgataacattaatttaagtccaattgatgattcaaatgcagttacagattcctct |
175 |
Q |
| |
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||||||| |||| || ||||| ||||||||||| ||||| | |||| |||||| || |||||||||||||||||||||| |||| |||||||||| ||| |
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| T |
54888123 |
aacgtcagtggaaattaaccaatttcagcagaacatttacccacctggtaacatgaaattaagtccaattgatgattcaagtgcatttacagattcttct |
54888024 |
T |
|
| Q |
176 |
agcttccaagacatcggagccactgtcaataatgcaaatgtttctctttcttgcatctcaagcaatcacatacaaacacataaatcagtagcatttatca |
275 |
Q |
| |
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| T |
54888023 |
ggcttccaagacatcagagctaatgttaataatgcaaatagttttctttcttgcatctcaagcaatcacctacaaacacataattcaagagcattcataa |
54887924 |
T |
|
| Q |
276 |
atcactctcatgttgaaggtgctgctgtgacaacacaatcttttaaccccgtcacaagtggttcctctaactttgcttccaattctgttccattgagtga |
375 |
Q |
| |
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||||| | ||||| |||| ||||| || | | ||||||||||||| | ||||||||||||| |||||||||||||||| || |||||||||||| |
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| T |
54887923 |
atcacccatctgttggaggtcctgctatggaacaaaaatcttttaaccctgctacaagtggttcctataactttgcttccaatccttctccattgagtga |
54887824 |
T |
|
| Q |
376 |
ggattttaacaatgatcaaatgttgcacaataactttaagtttgcttctcccagttctc---------------------atttttcttcgacagacatg |
454 |
Q |
| |
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||||||||| ||||||||||| | ||||||| ||| |||||||| || | |||||||| |||||||||||| | | | |
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| T |
54887823 |
ggattttaataatgatcaaatatctcacaatagcttaaagtttgcctcactcagttctcaatttaagaaaaatccagatgatttttcttcgatacgcgtc |
54887724 |
T |
|
| Q |
455 |
gttgctgttcctttggaggaaacaatgcaatgtcaagatggcttacttgggaatgttataaatgctccatggtacacacaacatcaaaatgcgagttctt |
554 |
Q |
| |
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||| ||||||||| |||||||| ||||||||||||||||| |||||||||| |||| ||| ||| |||| ||||| || || ||||||| | |||||| |
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| T |
54887723 |
attgatgttcctttagaggaaacgatgcaatgtcaagatggattacttgggagtgttgtaacggcttcatgttacacgcatcagcaaaatgtgggttctt |
54887624 |
T |
|
| Q |
555 |
ccttcaacaataccttggatt |
575 |
Q |
| |
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||||||||||||||||||||| |
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| T |
54887623 |
ccttcaacaataccttggatt |
54887603 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 104; E-Value: 1e-51
Query Start/End: Original strand, 92 - 435
Target Start/End: Complemental strand, 54893731 - 54893388
Alignment:
| Q |
92 |
aaccagtttcagcagaatatttatctgcctgataacattaatttaagtccaattgatgattcaaatgcagttacagattcctctagcttccaagacatcg |
191 |
Q |
| |
|
||||||||||||| ||| ||||||| || || ||||| ||||||| |||||||||| || ||| ||| |||||| ||| ||| |||||||||||||| |
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| T |
54893731 |
aaccagtttcagcggaacatttatccgcttggtaacaagaatttaaatccaattgattatacaagtgcttttacagtttcttctggcttccaagacatca |
54893632 |
T |
|
| Q |
192 |
gagccactgtcaataatgcaaatgtttctctttcttgcatctcaagcaatcacatacaaacacataaatcagtagcatttatcaatcactctcatgttga |
291 |
Q |
| |
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||| ||||| |||||||||||| ||||||||||||||||||||||||| || || ||||||||| |||| ||||||| | ||||||||| ||||| |
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| T |
54893631 |
gagatactgttaataatgcaaatagttctctttcttgcatctcaagcaataacctatcaacacataattcaggagcatttgtaaatcactcttctgttgg |
54893532 |
T |
|
| Q |
292 |
aggtgctgctgtgacaacacaatcttttaaccccgtcacaagtggttcctctaactttgcttccaattctgttccattgagtgaggattttaacaatgat |
391 |
Q |
| |
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||| ||| ||| | || |||||||||| || | ||| |||||| |||||||||||||||||| || |||||||||||||||||||||||||||| |
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| T |
54893531 |
aggggcttacgtggaaccaaaatcttttaatcctgctacatatggttcatctaactttgcttccaatccttctccattgagtgaggattttaacaatgat |
54893432 |
T |
|
| Q |
392 |
caaatgttgcacaataactttaagtttgcttctcccagttctca |
435 |
Q |
| |
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||||| | ||||| ||| || ||||| |||||||||||||| |
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| T |
54893431 |
caaatttctggcaatagcttaaattttgcctctcccagttctca |
54893388 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 456 - 585
Target Start/End: Complemental strand, 54893352 - 54893220
Alignment:
| Q |
456 |
ttgctgttcctttggaggaaacaatgcaatgtcaagatggcttacttgggaatgttataaatgctccatggtacaca---caacatcaaaatgcgagttc |
552 |
Q |
| |
|
|||||||||||| ||||||| | ||||||||||||||||||||||||||||||||| |||| ||| |||| ||||| || || ||||||| || || |
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| T |
54893352 |
ttgctgttccttcggaggaagcgatgcaatgtcaagatggcttacttgggaatgttgtaaaggcttcatgttacacgacgcagcagcaaaatgtcagctc |
54893253 |
T |
|
| Q |
553 |
ttccttcaacaataccttggattatcttgcttc |
585 |
Q |
| |
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||||||||||||||||||||| | ||||||||| |
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| T |
54893252 |
ttccttcaacaataccttggactctcttgcttc |
54893220 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 206 - 283
Target Start/End: Original strand, 11186426 - 11186503
Alignment:
| Q |
206 |
aatgcaaatgtttctctttcttgcatctcaagcaatcacatacaaacacataaatcagtagcatttatcaatcactct |
283 |
Q |
| |
|
||||||||| ||||||||||||||||||||||||||| ||| |||| | || |||| ||||||||||||||||||| |
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|
| T |
11186426 |
aatgcaaattgttctctttcttgcatctcaagcaatcaactactaacataaaattcagcagcatttatcaatcactct |
11186503 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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