View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17846_low_4 (Length: 491)
Name: NF17846_low_4
Description: NF17846
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17846_low_4 |
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Alignment Details
Target: chr3 (Bit Score: 163; Significance: 7e-87; HSPs: 5)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 163; E-Value: 7e-87
Query Start/End: Original strand, 208 - 411
Target Start/End: Original strand, 9445952 - 9446150
Alignment:
| Q |
208 |
acccttggcttcatcactcaccttttaagtctgaccactcttgagaagtgaacatgtttctaattttttgttttaggttgtgcaacctttgcaattgaag |
307 |
Q |
| |
|
||||||||||||||||||||||||| ||||| |||||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||||| |
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| T |
9445952 |
acccttggcttcatcactcaccttt-aagtccgaccactcttgagaagtgaacatggttctaattttttgttttaggttgtgaaacctttgcaattgaag |
9446050 |
T |
|
| Q |
308 |
aaagtttgttgcaaaacttgtgactccatgtctaatcaactccatttcagctttctccctcaacaagttcaaaaccaaagaacagttatagatgaaactg |
407 |
Q |
| |
|
|||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
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| T |
9446051 |
aaagtttgttgc----cttgtgactccatgtctaatcaactccatttcagctttctccctcaacaagttcaaaaccaaagaacggttatagatgaaactg |
9446146 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 152; E-Value: 3e-80
Query Start/End: Original strand, 208 - 411
Target Start/End: Original strand, 3071444 - 3071646
Alignment:
| Q |
208 |
acccttggcttcatcactcaccttttaagtctgaccactcttgagaagtgaacatgtttctaattttttgttttaggttgtgcaacctttgcaattgaag |
307 |
Q |
| |
|
||||||||||||||||| ||||||| |||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3071444 |
acccttggcttcatcacccaccttt-aagtctgaccactcttgagaagtgaaaatggttctaattttttgttttaggttgtgcaacctttgcaattgaag |
3071542 |
T |
|
| Q |
308 |
aaagtttgttgcaaaacttgtgactccatgtctaatcaactccatttcagctttctccctcaacaagttcaaaaccaaagaacagttatagatgaaactg |
407 |
Q |
| |
|
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| || ||||||||||||||| |
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| T |
3071543 |
aaagtttgttgcaaaccttgtgactccatgtctaatcaactccatttcagctttctccctcaacagattcaaaaccaagtaatggttatagatgaaacta |
3071642 |
T |
|
| Q |
408 |
acaa |
411 |
Q |
| |
|
|||| |
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|
| T |
3071643 |
acaa |
3071646 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 109; E-Value: 1e-54
Query Start/End: Original strand, 38 - 179
Target Start/End: Original strand, 9443797 - 9443938
Alignment:
| Q |
38 |
gattatgtggtattacgaaatgaaaatgtagcctagacatcaccctttgccacaccttcaacaccacctcacaatgcnnnnnnngatgcaacgttgtttc |
137 |
Q |
| |
|
|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||| |
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| T |
9443797 |
gattatgtggtattacgaaatgaaaatgtagcacagacatcaccctttgccacaccttcaacaccacctcacaatgcaaaaaaagatgcaacgtcgtttc |
9443896 |
T |
|
| Q |
138 |
ctccacccttctgcacaatacacaatttctcgattcctccac |
179 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| |
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| T |
9443897 |
ctccacccttctgcacaatacacaatttctcgattcctccac |
9443938 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 80; E-Value: 3e-37
Query Start/End: Original strand, 135 - 214
Target Start/End: Original strand, 9443930 - 9444009
Alignment:
| Q |
135 |
ttcctccacccttctgcacaatacacaatttctcgattcctccacattcaacactcctctatacgctagattcacccttg |
214 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
9443930 |
ttcctccacccttctgcacaatacacaatttctcgattcctccacattcaacactcctctatacgctagattcacccttg |
9444009 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 421 - 476
Target Start/End: Original strand, 9446414 - 9446469
Alignment:
| Q |
421 |
gcaccatgacaccattcgttttacacattaatcttccgaagctttttccttcatcg |
476 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
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|
| T |
9446414 |
gcaccatgacaccattcgttttacacattaatcttctgaagctttttccttcatcg |
9446469 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 132; Significance: 2e-68; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 132; E-Value: 2e-68
Query Start/End: Original strand, 212 - 411
Target Start/End: Original strand, 24193812 - 24194010
Alignment:
| Q |
212 |
ttggcttcatcactcaccttttaagtctgaccactcttgagaagtgaacatgtttctaattttttgttttaggttgtgcaacctttgcaattgaagaaag |
311 |
Q |
| |
|
|||||||| ||||| |||||| || || |||||||||||||||||||||||| || |||||||||||||||||||||||||| ||||||||||||||||| |
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|
| T |
24193812 |
ttggcttcgtcactgacctttaaa-tccgaccactcttgagaagtgaacatggttataattttttgttttaggttgtgcaacatttgcaattgaagaaag |
24193910 |
T |
|
| Q |
312 |
tttgttgcaaaacttgtgactccatgtctaatcaactccatttcagctttctccctcaacaagttcaaaaccaaagaacagttatagatgaaactgacaa |
411 |
Q |
| |
|
||||||||||| |||||||||| ||||||||||||||| |||||||||||||||||||||| ||||||||||||||| |||||||||||||| ||||| |
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|
| T |
24193911 |
tttgttgcaaaccttgtgactcaatgtctaatcaactcactttcagctttctccctcaacaaattcaaaaccaaagaatggttatagatgaaaccgacaa |
24194010 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 132; E-Value: 2e-68
Query Start/End: Original strand, 208 - 411
Target Start/End: Complemental strand, 24194709 - 24194507
Alignment:
| Q |
208 |
acccttggcttcatcactcaccttttaagtctgaccactcttgagaagtgaacatgtttctaattttttgttttaggttgtgcaacctttgcaattgaag |
307 |
Q |
| |
|
||||||| |||| |||||||||||| || || ||||||| |||||||||||||||| |||||| |||||||||||||||||||||| ||||||||||||| |
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|
| T |
24194709 |
acccttgacttcgtcactcacctttaaattc-gaccactgttgagaagtgaacatggttctaaatttttgttttaggttgtgcaacatttgcaattgaag |
24194611 |
T |
|
| Q |
308 |
aaagtttgttgcaaaacttgtgactccatgtctaatcaactccatttcagctttctccctcaacaagttcaaaaccaaagaacagttatagatgaaactg |
407 |
Q |
| |
|
||||||||||||||| |||||||||| ||||||||||||||| |||||||||||||||||||||| ||||||||||||||| |||||||||||||| | |
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|
| T |
24194610 |
aaagtttgttgcaaaccttgtgactcaatgtctaatcaactcactttcagctttctccctcaacaaattcaaaaccaaagaatggttatagatgaaaccg |
24194511 |
T |
|
| Q |
408 |
acaa |
411 |
Q |
| |
|
|||| |
|
|
| T |
24194510 |
acaa |
24194507 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 80 - 214
Target Start/End: Complemental strand, 17192927 - 17192793
Alignment:
| Q |
80 |
ccctttgccacaccttcaacaccacctcacaatgcnnnnnnngatgcaacgttgtttcctccacccttctgcacaatacacaatttctcgattcctccac |
179 |
Q |
| |
|
||||||||||||||||||| || |||||| ||||| | || |||| |||||||||||||| | ||||| ||||||||| ||||| ||||| | |
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|
| T |
17192927 |
ccctttgccacaccttcaaaacaacctcataatgcaagaaaaggtgtaacgccgtttcctccaccctcccacacaacacacaatttttcgatgcctccgc |
17192828 |
T |
|
| Q |
180 |
attcaacactcctctatacgctagattcacccttg |
214 |
Q |
| |
|
|||||||||||||||| || |||| |||||||||| |
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|
| T |
17192827 |
attcaacactcctctagacactaggttcacccttg |
17192793 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 121; Significance: 9e-62; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 121; E-Value: 9e-62
Query Start/End: Original strand, 208 - 403
Target Start/End: Complemental strand, 2947273 - 2947078
Alignment:
| Q |
208 |
acccttggcttcatcactcaccttttaagtctgaccactcttgagaagtgaaca-tgtttctaattttttgttttaggttgtgcaacctttgcaattgaa |
306 |
Q |
| |
|
||||||||||||||||||||||||| ||||| ||||| |||||| ||||||||| ||||| | |||||||||||||||||| |||||||| |||||||| |
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| T |
2947273 |
acccttggcttcatcactcaccttt-aagtccgaccattcttgaaaagtgaacaatgttttaatttttttgttttaggttgtacaaccttttcaattgaa |
2947175 |
T |
|
| Q |
307 |
gaaagtttgttgcaaaacttgtgactccatgtctaatcaactccatttcagctttctccctcaacaagttcaaaaccaaagaacagttatagatgaa |
403 |
Q |
| |
|
|||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||| ||| || ||||||||||||||| |||||||||||| |
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|
| T |
2947174 |
gaaagtttgtggcaaaccttgtgactccatgtctaatcaactccatttcagctttctcccacaataaattcaaaaccaaagaatggttatagatgaa |
2947078 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 52; Significance: 1e-20; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 38 - 214
Target Start/End: Complemental strand, 28800812 - 28800636
Alignment:
| Q |
38 |
gattatgtggtattacgaaatgaaaatgtagcctagacatcaccctttgccacaccttcaacaccacctcacaatgcnnnnnnngatgcaacgttgtttc |
137 |
Q |
| |
|
||||||||||||||| ||||| ||| || | || ||||||||| ||| |||||||||||| |||||||||||||||| |||| | || ||||| |
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|
| T |
28800812 |
gattatgtggtattaagaaattaaattggaaccaagacatcactcttcgccacaccttcatcaccacctcacaatgcaagaaaagatgtgatgtcgtttc |
28800713 |
T |
|
| Q |
138 |
ctccacccttctgcacaatacacaatttctcgattcctccacattcaacactcctctatacgctagattcacccttg |
214 |
Q |
| |
|
||||||||||| |||||| |||||||| |||| ||| | |||||||| |||||||| ||| || |||||||||| |
|
|
| T |
28800712 |
ctccacccttccgcacaacacacaattcttcgacgccttcccattcaaccctcctctagtcgcaaggttcacccttg |
28800636 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 51; Significance: 5e-20; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 249 - 405
Target Start/End: Original strand, 39164132 - 39164272
Alignment:
| Q |
249 |
tgagaagtgaacatgtttctaattttttgttttaggttgtgcaacctttgcaattgaagaaagtttgttgcaaaacttgtgactccatgtctaatcaact |
348 |
Q |
| |
|
||||||||||||||| |||||||||||| |||||||||||||||| |||||||| ||||| |||||| |||||||||||||||||| |
|
|
| T |
39164132 |
tgagaagtgaacatggttctaattttttattttaggttgtgcaac---------------aagtttgtggcaaaccttgtg-ctccatgtctaatcaact |
39164215 |
T |
|
| Q |
349 |
ccatttcagctttctccctcaacaagttcaaaaccaaagaacagttatagatgaaac |
405 |
Q |
| |
|
| || ||| ||||||||||||||| ||||||||| ||||| |||||||||||||| |
|
|
| T |
39164216 |
cgcttccagttttctccctcaacaaattcaaaacccaagaatggttatagatgaaac |
39164272 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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