View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF17846_low_6 (Length: 462)
Name: NF17846_low_6
Description: NF17846
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17846_low_6 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 348; Significance: 0; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 348; E-Value: 0
Query Start/End: Original strand, 12 - 448
Target Start/End: Complemental strand, 9399915 - 9399473
Alignment:
| Q |
12 |
caaaggaaggaaggaaaataagggtgagcagggtgctgaattcagagactttcttgatatattgcttgattgtgctgaggatcaaaattcagaaataaaa |
111 |
Q |
| |
|
|||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
|
|
| T |
9399915 |
caaaggaaggaaagaaaataagggtgagcaaggtgctgaattcagagactttcttgatatattgcttgattgtgccgaggatcaaaattcagaaataaaa |
9399816 |
T |
|
| Q |
112 |
gttcaaagggttcacatcaaggccttgattatggtaattaaatttatcgctacttctttcttttatgtacaattcgta-atcaatgctcaaacgtttgtt |
210 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||| ||||||||||||| ||||||| |
|
|
| T |
9399815 |
gttcaaagggttcacatcaaggccttgattatggtaattaaatttatctctacttctttcttttatgtacaagtcgtatatcaatgctcaaatgtttgtt |
9399716 |
T |
|
| Q |
211 |
ttggattttttcttactaaaaaatctagaagnnnnnnnnnaagaacaatatattgaag-----tatattgaacacacaattttatatgatccacagtaaa |
305 |
Q |
| |
|
||||||||||||||||||||||||||||||| |||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
|
|
| T |
9399715 |
ttggattttttcttactaaaaaatctagaagtatttttttaagaacaatatattgaagtatattatattgaacacacaattttatatgatccacagtaaa |
9399616 |
T |
|
| Q |
306 |
acttaattggtacggatttgaataacaaatattccctttgaaaaatattcattgatgagttaatatttcttctatgagcacgtgcctcttagacctaatc |
405 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||| |||||||||||| |
|
|
| T |
9399615 |
acttaattggtacggatttgaataacaaatattccctttgaaaaatattcattgatgagttgatatttcttttatgagcacgtgcctgttagacctaatc |
9399516 |
T |
|
| Q |
406 |
aactagattttgacataatatcaaataattccaggataaaatt |
448 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| |||||| |
|
|
| T |
9399515 |
aactagattttgacataatatcaaataattccaggacaaaatt |
9399473 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 148; E-Value: 6e-78
Query Start/End: Original strand, 12 - 175
Target Start/End: Complemental strand, 9382446 - 9382283
Alignment:
| Q |
12 |
caaaggaaggaaggaaaataagggtgagcagggtgctgaattcagagactttcttgatatattgcttgattgtgctgaggatcaaaattcagaaataaaa |
111 |
Q |
| |
|
|||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
9382446 |
caaaggaaggaaagaaaataagggtgagcaaggtgctgaattcagagactttcttgatatattgcttgattgtgctgaggatcaaaattcagaaataaaa |
9382347 |
T |
|
| Q |
112 |
gttcaaagggttcacatcaaggccttgattatggtaattaaatttatcgctacttctttctttt |
175 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||| |
|
|
| T |
9382346 |
gttcaaagggttcacatcaaggccttgattatggtaattaaatttatccctacttccttctttt |
9382283 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 88; E-Value: 4e-42
Query Start/End: Original strand, 304 - 446
Target Start/End: Complemental strand, 9382129 - 9381986
Alignment:
| Q |
304 |
aaacttaattggtacggatttgaataacaaatattccctttgaaaaatattcattgatgagttaatatttcttctatgagcacgtgcc-tcttagaccta |
402 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| || | ||||||||||||||||| ||||||| |||||||||||||||| | |||||| || |
|
|
| T |
9382129 |
aaacttaattggtacggatttgaataacaaatattcccttcgatacatattcattgatgagttgatatttcatctatgagcacgtgccttattagactta |
9382030 |
T |
|
| Q |
403 |
atcaactagattttgacataatatcaaataattccaggataaaa |
446 |
Q |
| |
|
|||| || ||||||||||||||||||||||||| |||| |||| |
|
|
| T |
9382029 |
gtcaattaaattttgacataatatcaaataattcaaggacaaaa |
9381986 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 34; Significance: 0.0000000007; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 55 - 148
Target Start/End: Original strand, 23243822 - 23243915
Alignment:
| Q |
55 |
agagactttcttgatatattgcttgattgtgctgaggatcaaaattcagaaataaaagttcaaagggttcacatcaaggccttgattatggtaa |
148 |
Q |
| |
|
||||||||||||||||| | ||||||| || |||||| ||| || || || ||| |||||||||||||| | ||||||||||||||||||| |
|
|
| T |
23243822 |
agagactttcttgatatcctacttgattatgtcgaggatgaaagctctgagatgaaaattcaaagggttcacgttaaggccttgattatggtaa |
23243915 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University