View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17846_low_7 (Length: 429)
Name: NF17846_low_7
Description: NF17846
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17846_low_7 |
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Alignment Details
Target: chr1 (Bit Score: 379; Significance: 0; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 379; E-Value: 0
Query Start/End: Original strand, 17 - 424
Target Start/End: Complemental strand, 40266202 - 40265791
Alignment:
| Q |
17 |
aataagctaataatgaaatgtaatgacaatggctcttggctgcaaaattctccgttgacattgtacactcgcaaagaggttccttggtatctggtgtgta |
116 |
Q |
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| T |
40266202 |
aataagctaataatgaaatgtaatgacaatggctcttggctgcaaaattctccgttgacattgtacactcgcaatgaggttccttggtatctggtgtgta |
40266103 |
T |
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| Q |
117 |
ctttttctctgttcttttaatgcaattttagttgttcctggttatcgggatgatgggaattgagatgcctgtttcttgaagtgaatatttaagcttataa |
216 |
Q |
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| T |
40266102 |
ctttttctctgttcttttaatgcaattttagttgttcctggttatcgggatgatgggaattgagatgcctgtttcttgaagtgaatatttaagcttataa |
40266003 |
T |
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| Q |
217 |
actaaacattttgacagaatatacttgaaattaatattttagataacaagtccttcaattc----tgttaggatgatgggaccggtcgcgtgcttgtggt |
312 |
Q |
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| T |
40266002 |
actaaacattttaacagaatatacttgaaattaatattttagataacaagtccttatattctgtttgttaggatgatgggaccggtcgcgtgcttgtggt |
40265903 |
T |
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| Q |
313 |
tggaagcgagacgtttgaagattcgggttgggcacgtgcatgtaaaacattgaatcatctccaaggtgtaaaggtgggagtgtcagctccattgtctgct |
412 |
Q |
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| T |
40265902 |
tggaagcgagacgtttgaagattcgggttgggcacgtgcatgtaaaacattgaatcatctccaaggtgtaaaggtgggagtgtcagctccattgtctgct |
40265803 |
T |
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| Q |
413 |
tcggtctctgtg |
424 |
Q |
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| T |
40265802 |
tcggtctctgtg |
40265791 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 280 - 316
Target Start/End: Complemental strand, 40284696 - 40284660
Alignment:
| Q |
280 |
ttaggatgatgggaccggtcgcgtgcttgtggttgga |
316 |
Q |
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| T |
40284696 |
ttaggatgatgggactggtcgtgtgcttgtggttgga |
40284660 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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