View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17846_low_9 (Length: 321)

Name: NF17846_low_9
Description: NF17846
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17846_low_9
NF17846_low_9
[»] chr5 (18 HSPs)
chr5 (39-170)||(17225317-17225446)
chr5 (27-169)||(1815666-1815808)
chr5 (39-169)||(40888004-40888134)
chr5 (26-168)||(39370927-39371069)
chr5 (27-169)||(27553423-27553565)
chr5 (23-172)||(13347124-13347273)
chr5 (19-169)||(4300585-4300735)
chr5 (39-168)||(2237276-2237405)
chr5 (39-180)||(9408101-9408242)
chr5 (47-157)||(14831555-14831665)
chr5 (72-168)||(33404531-33404627)
chr5 (19-130)||(31800596-31800707)
chr5 (19-168)||(19596110-19596258)
chr5 (42-159)||(41003915-41004031)
chr5 (39-170)||(19124534-19124663)
chr5 (80-165)||(12164254-12164339)
chr5 (39-97)||(42683670-42683728)
chr5 (93-163)||(3725730-3725800)
[»] chr7 (24 HSPs)
chr7 (26-168)||(45782709-45782851)
chr7 (23-169)||(36346611-36346756)
chr7 (19-168)||(5811205-5811354)
chr7 (20-165)||(34828069-34828213)
chr7 (26-170)||(26972252-26972396)
chr7 (41-168)||(42221027-42221154)
chr7 (20-162)||(31148296-31148438)
chr7 (26-168)||(34108426-34108568)
chr7 (39-168)||(28307557-28307686)
chr7 (25-171)||(7700525-7700671)
chr7 (19-168)||(13108148-13108296)
chr7 (25-168)||(7699931-7700074)
chr7 (25-168)||(7700129-7700272)
chr7 (25-168)||(7700327-7700470)
chr7 (39-162)||(23980137-23980260)
chr7 (18-168)||(30887700-30887850)
chr7 (18-168)||(15020282-15020429)
chr7 (18-164)||(21807363-21807509)
chr7 (19-126)||(46475066-46475174)
chr7 (26-146)||(36957451-36957571)
chr7 (38-163)||(38321014-38321139)
chr7 (38-130)||(20086689-20086781)
chr7 (73-126)||(42950109-42950162)
chr7 (26-69)||(29953621-29953664)
[»] chr4 (15 HSPs)
chr4 (26-168)||(49243815-49243957)
chr4 (23-168)||(3672274-3672419)
chr4 (19-169)||(21390997-21391147)
chr4 (26-169)||(28093145-28093288)
chr4 (19-169)||(44275705-44275855)
chr4 (26-170)||(6112628-6112772)
chr4 (39-169)||(46192358-46192488)
chr4 (39-168)||(45829319-45829448)
chr4 (41-169)||(35544911-35545039)
chr4 (39-169)||(7217764-7217894)
chr4 (38-163)||(51038768-51038894)
chr4 (19-169)||(52191242-52191392)
chr4 (39-163)||(54849793-54849917)
chr4 (99-169)||(25437007-25437077)
chr4 (85-163)||(36157840-36157918)
[»] chr2 (12 HSPs)
chr2 (23-165)||(44958116-44958258)
chr2 (39-168)||(33732569-33732698)
chr2 (170-308)||(3779248-3779379)
chr2 (19-169)||(16089821-16089970)
chr2 (19-168)||(36315561-36315710)
chr2 (26-169)||(14572994-14573137)
chr2 (26-170)||(37498912-37499058)
chr2 (19-169)||(3830939-3831087)
chr2 (39-169)||(37914298-37914428)
chr2 (39-168)||(24137154-24137287)
chr2 (19-174)||(6376280-6376430)
chr2 (38-160)||(41188777-41188899)
[»] chr8 (14 HSPs)
chr8 (23-169)||(10203663-10203809)
chr8 (26-170)||(31318803-31318947)
chr8 (39-168)||(30432339-30432468)
chr8 (23-165)||(12665347-12665490)
chr8 (26-168)||(42162598-42162740)
chr8 (19-165)||(18184556-18184702)
chr8 (19-162)||(33726017-33726161)
chr8 (40-171)||(43186024-43186155)
chr8 (30-168)||(36189216-36189354)
chr8 (26-167)||(44081781-44081922)
chr8 (39-146)||(42668844-42668950)
chr8 (39-163)||(3690664-3690788)
chr8 (77-163)||(31547-31633)
chr8 (27-120)||(38845073-38845165)
[»] chr3 (23 HSPs)
chr3 (23-169)||(36370384-36370530)
chr3 (26-169)||(46111993-46112136)
chr3 (19-169)||(51339825-51339973)
chr3 (39-177)||(43999980-44000118)
chr3 (23-168)||(22894680-22894825)
chr3 (39-168)||(34749960-34750089)
chr3 (26-174)||(21559555-21559703)
chr3 (39-169)||(36749405-36749535)
chr3 (72-178)||(29460650-29460756)
chr3 (72-178)||(29471502-29471608)
chr3 (41-169)||(30735560-30735687)
chr3 (72-168)||(38231293-38231389)
chr3 (19-170)||(39467143-39467294)
chr3 (37-169)||(50966130-50966258)
chr3 (37-169)||(51069265-51069393)
chr3 (42-160)||(20856218-20856334)
chr3 (39-165)||(48200688-48200814)
chr3 (54-171)||(39072350-39072467)
chr3 (39-147)||(53638156-53638264)
chr3 (20-76)||(29472901-29472957)
chr3 (75-161)||(29820397-29820483)
chr3 (78-162)||(5417684-5417768)
chr3 (91-163)||(11008422-11008494)
[»] chr1 (10 HSPs)
chr1 (26-168)||(34307187-34307329)
chr1 (23-164)||(2509028-2509169)
chr1 (26-173)||(39249912-39250059)
chr1 (19-169)||(19258714-19258864)
chr1 (26-168)||(28647353-28647495)
chr1 (34-168)||(46901792-46901926)
chr1 (45-164)||(29099821-29099939)
chr1 (20-121)||(9642909-9643010)
chr1 (85-163)||(10146971-10147049)
chr1 (76-111)||(8848952-8848987)
[»] scaffold0062 (1 HSPs)
scaffold0062 (23-164)||(6722-6863)
[»] chr6 (6 HSPs)
chr6 (19-168)||(14022934-14023083)
chr6 (39-169)||(3986967-3987097)
chr6 (19-168)||(24208444-24208593)
chr6 (26-169)||(3118096-3118239)
chr6 (40-169)||(15345722-15345849)
chr6 (19-168)||(13697569-13697717)
[»] scaffold0043 (1 HSPs)
scaffold0043 (19-164)||(87204-87350)


Alignment Details
Target: chr5 (Bit Score: 109; Significance: 8e-55; HSPs: 18)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 109; E-Value: 8e-55
Query Start/End: Original strand, 39 - 170
Target Start/End: Complemental strand, 17225446 - 17225317
Alignment:
Q  39 tattttagtaattttacatcatatcatcacctcttttcatctcttctttcaatgtttttgtcacatgtcacaaatgtgtgtggatgtaaaagaatgtatg 138  Q
    |||||||||||||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||  |||||    
T  17225446 tattttagtaatttcacatcacatcatcacctcttttcatctcttctttcaatgtttttgtcacatgtcacaaatgtgtgtgggtgtaaaaga--gtatg 17225349  T
Q  139 ccacctaaagtggttcatgtataagagctcta 170  Q
    ||||||||||||||||||||||||||||||||    
T  17225348 ccacctaaagtggttcatgtataagagctcta 17225317  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 99; E-Value: 7e-49
Query Start/End: Original strand, 27 - 169
Target Start/End: Original strand, 1815666 - 1815808
Alignment:
Q  27 atgtgttaggaatattttagtaattttacatcatatcatcacctcttttcatctcttctttcaatgtttttgtcacatgtcacaaatgtgtgtggatgta 126  Q
    ||||||||||  ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| ||| |||||||||| ||||||||||||    
T  1815666 atgtgttaggggtattttagtaattttacatcatatcatcaccccttttcatctcttctttcaatgtttttgccacgtgtcacaaatatgtgtggatgta 1815765  T
Q  127 aaagaatgtatgccacctaaagtggttcatgtataagagctct 169  Q
    ||||  |||||| |||||||  |||||||||||||||||||||    
T  1815766 aaagggtgtatgtcacctaagatggttcatgtataagagctct 1815808  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 39 - 169
Target Start/End: Original strand, 40888004 - 40888134
Alignment:
Q  39 tattttagtaattttacatcatatcatcacctcttttcatctcttctttcaatgtttttgtcacatgtcacaaatgtgtgtggatgtaaaagaatgtatg 138  Q
    |||||||||||||||||||||||||| ||||  ||||||||||||||||||||||||||| ||| |||||||||||||||||| ||||||||| ||||||    
T  40888004 tattttagtaattttacatcatatcaccaccctttttcatctcttctttcaatgtttttgccacgtgtcacaaatgtgtgtgggtgtaaaagagtgtatg 40888103  T
Q  139 ccacctaaagtggttcatgtataagagctct 169  Q
    |||||||| |||||| |||||||||||||||    
T  40888104 ccacctaaggtggtttatgtataagagctct 40888134  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 91; E-Value: 4e-44
Query Start/End: Original strand, 26 - 168
Target Start/End: Complemental strand, 39371069 - 39370927
Alignment:
Q  26 catgtgttaggaatattttagtaattttacatcatatcatcacctcttttcatctcttctttcaatgtttttgtcacatgtcacaaatgtgtgtggatgt 125  Q
    ||||| |||||  ||||| |||||||||||||||||||||||||  ||||||||||||||||||||||||||| ||| |||||||||||||||||| |||    
T  39371069 catgtattaggggtatttgagtaattttacatcatatcatcaccctttttcatctcttctttcaatgtttttggcacgtgtcacaaatgtgtgtgggtgt 39370970  T
Q  126 aaaagaatgtatgccacctaaagtggttcatgtataagagctc 168  Q
    |||||  ||||||||| |||| |||||||||||||||||||||    
T  39370969 aaaagggtgtatgccatctaaggtggttcatgtataagagctc 39370927  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 27 - 169
Target Start/End: Original strand, 27553423 - 27553565
Alignment:
Q  27 atgtgttaggaatattttagtaattttacatcatatcatcacctcttttcatctcttctttcaatgtttttgtcacatgtcacaaatgtgtgtggatgta 126  Q
    ||||||||||| ||||||||||||||||||||| || ||||||  ||||| ||||||||||||||||||||| ||| |||||||||||||||||| ||||    
T  27553423 atgtgttaggagtattttagtaattttacatcagataatcaccatttttcttctcttctttcaatgtttttgccacgtgtcacaaatgtgtgtgggtgta 27553522  T
Q  127 aaagaatgtatgccacctaaagtggttcatgtataagagctct 169  Q
    |||   | ||||||||||||| |||||||||||||||||||||    
T  27553523 aaatggtatatgccacctaaaatggttcatgtataagagctct 27553565  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 86; E-Value: 4e-41
Query Start/End: Original strand, 23 - 172
Target Start/End: Complemental strand, 13347273 - 13347124
Alignment:
Q  23 cctcatgtgttaggaatattttagtaattttacatcatatcatcacctcttttcatctcttctttcaatgtttttgtcacatgtcacaaatgtgtgtgga 122  Q
    |||||||| |||||  ||||| ||||||| ||||||||||||||||   ||||||||| ||||||||||||||||| ||| ||||||||||||||||||     
T  13347273 cctcatgtattaggggtatttgagtaattatacatcatatcatcactctttttcatctattctttcaatgtttttgccacgtgtcacaaatgtgtgtggg 13347174  T
Q  123 tgtaaaagaatgtatgccacctaaagtggttcatgtataagagctctatt 172  Q
    ||||||||  |||||||||||||| ||||||||||||||| |||||||||    
T  13347173 tgtaaaagggtgtatgccacctaaggtggttcatgtataaaagctctatt 13347124  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 19 - 169
Target Start/End: Original strand, 4300585 - 4300735
Alignment:
Q  19 tacacctcatgtgttaggaatattttagtaattttacatcatatcatcacctcttttcatctcttctttcaatgtttttgtcacatgtcacaaatgtgtg 118  Q
    |||||||||||||||||| |||||||| |||||| |||||| |||| ||||  |||| ||||||| |||||||||||||| || ||||||||||| ||||    
T  4300585 tacacctcatgtgttagggatattttaataatttcacatcacatcaccaccattttttatctcttatttcaatgtttttgccatatgtcacaaatatgtg 4300684  T
Q  119 tggatgtaaaagaatgtatgccacctaaagtggttcatgtataagagctct 169  Q
    ||| |||||||| || |||| |||||||| |||||||||||||||||||||    
T  4300685 tgggtgtaaaaggatatatgtcacctaaaatggttcatgtataagagctct 4300735  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 39 - 168
Target Start/End: Complemental strand, 2237405 - 2237276
Alignment:
Q  39 tattttagtaattttacatcatatcatcacctcttttcatctcttctttcaatgtttttgtcacatgtcacaaatgtgtgtggatgtaaaagaatgtatg 138  Q
    ||||| |||||||||||||||||||||||||  ||||||||||||||||||||||||||| ||| |||||||||| ||||||| ||||||||  ||||||    
T  2237405 tatttgagtaattttacatcatatcatcaccctttttcatctcttctttcaatgtttttgccacgtgtcacaaatatgtgtgggtgtaaaagggtgtatg 2237306  T
Q  139 ccacctaaagtggttcatgtataagagctc 168  Q
     ||||||| ||||||||||||||| |||||    
T  2237305 tcacctaaggtggttcatgtataaaagctc 2237276  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 39 - 180
Target Start/End: Original strand, 9408101 - 9408242
Alignment:
Q  39 tattttagtaattttacatcatatcatcacctcttttcatctcttctttcaatgtttttgtcacatgtcacaaatgtgtgtggatgtaaaagaatgtatg 138  Q
    ||||| |||||||||||||||||||||||||  ||||||||||||||||||||||||||| ||| |||||||||||||||||  ||||||||   |||||    
T  9408101 tatttgagtaattttacatcatatcatcaccctttttcatctcttctttcaatgtttttgccacgtgtcacaaatgtgtgtgagtgtaaaagggcgtatg 9408200  T
Q  139 ccacctaaagtggttcatgtataagagctctatttaatatga 180  Q
     ||||| | ||||||||||||||||||||||||  |||||||    
T  9408201 tcacctgaggtggttcatgtataagagctctataaaatatga 9408242  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 47 - 157
Target Start/End: Complemental strand, 14831665 - 14831555
Alignment:
Q  47 taattttacatcatatcatcacctcttttcatctcttctttcaatgtttttgtcacatgtcacaaatgtgtgtggatgtaaaagaatgtatgccacctaa 146  Q
    |||||||||||||||||||||||  ||||||||||||||||||||||||||| ||| | |||||||||||||||| ||||||||  ||||||||||||||    
T  14831665 taattttacatcatatcatcaccctttttcatctcttctttcaatgtttttgccacgtatcacaaatgtgtgtgggtgtaaaagggtgtatgccacctaa 14831566  T
Q  147 agtggttcatg 157  Q
     ||||||||||    
T  14831565 ggtggttcatg 14831555  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 69; E-Value: 6e-31
Query Start/End: Original strand, 72 - 168
Target Start/End: Original strand, 33404531 - 33404627
Alignment:
Q  72 ttttcatctcttctttcaatgtttttgtcacatgtcacaaatgtgtgtggatgtaaaagaatgtatgccacctaaagtggttcatgtataagagctc 168  Q
    ||||||||||||||||||||||||||| ||| |||||||||||||||||| ||||||||  |||||| ||||||| |||||||||||||||||||||    
T  33404531 ttttcatctcttctttcaatgtttttgccacgtgtcacaaatgtgtgtgggtgtaaaagtgtgtatggcacctaaggtggttcatgtataagagctc 33404627  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 19 - 130
Target Start/End: Complemental strand, 31800707 - 31800596
Alignment:
Q  19 tacacctcatgtgttaggaatattttagtaattttacatcatatcatcacctcttttcatctcttctttcaatgtttttgtcacatgtcacaaatgtgtg 118  Q
    |||||| ||| |||||||  ||||||||||||||||||||||||||||||| |||||||||| |||||||||| |||||| ||| ||||| |||||||||    
T  31800707 tacaccccatatgttaggggtattttagtaattttacatcatatcatcaccccttttcatcttttctttcaatatttttgccacgtgtcataaatgtgtg 31800608  T
Q  119 tggatgtaaaag 130  Q
    ||| ||||||||    
T  31800607 tgggtgtaaaag 31800596  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 19 - 168
Target Start/End: Original strand, 19596110 - 19596258
Alignment:
Q  19 tacacctcatgtgttaggaatattttagtaattttacatcatatcatcacctcttttcatctcttctttcaatgtttttgtcacatgtcacaaatgtgtg 118  Q
    |||||| ||||||| |||  || |||||| |||| |||| | || ||||| | |||||| |||||||||||||||||||| ||||||||||||||||| |    
T  19596110 tacaccccatgtgtcaggggtagtttagtcatttcacattacattatcac-tattttcacctcttctttcaatgtttttgccacatgtcacaaatgtgcg 19596208  T
Q  119 tggatgtaaaagaatgtatgccacctaaagtggttcatgtataagagctc 168  Q
    |||||||||||   |||||||||||||| ||||||||||||||| |||||    
T  19596209 tggatgtaaaaaggtgtatgccacctaaggtggttcatgtataacagctc 19596258  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 42 - 159
Target Start/End: Original strand, 41003915 - 41004031
Alignment:
Q  42 tttagtaattttacatcatatcatcacctcttttcatctcttctttcaatgtttttgtcacatgtcacaaatgtgtgtggatgtaaaagaatgtatgcca 141  Q
    |||||||||||||||||| ||||||| | ||||| || |||| ||||||| |||||| ||||||||| |||||||| ||  ||||||||  |||||||||    
T  41003915 tttagtaattttacatcacatcatcatccctttttatatctt-tttcaatatttttgccacatgtcataaatgtgtatgagtgtaaaagggtgtatgcca 41004013  T
Q  142 cctaaagtggttcatgta 159  Q
    ||||||||||||||||||    
T  41004014 cctaaagtggttcatgta 41004031  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 39 - 170
Target Start/End: Original strand, 19124534 - 19124663
Alignment:
Q  39 tattttagtaattttacatcatatcatcacctcttttcatctcttctttcaatgtttttgtcacatgtcacaaatgtgtgtggatgtaaaagaatgtatg 138  Q
    |||||||||||||||||||||||||||||| |  ||||||||||||||| |||||||||| |||| ||||||| ||||||||| ||| |||   ||||||    
T  19124534 tattttagtaattttacatcatatcatcacattctttcatctcttcttt-aatgtttttgccacacgtcacaattgtgtgtgggtgtcaaa-tgtgtatg 19124631  T
Q  139 ccacctaaagtggttcatgtataagagctcta 170  Q
    ||| ||||  | || ||||||||||| |||||    
T  19124632 ccatctaagatagtccatgtataagaactcta 19124663  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 80 - 165
Target Start/End: Complemental strand, 12164339 - 12164254
Alignment:
Q  80 tcttctttcaatgtttttgtcacatgtcacaaatgtgtgtggatgtaaaagaatgtatgccacctaaagtggttcatgtataagag 165  Q
    ||||||||||||||||||| |||||| ||||| ||||||||  | | ||||||||| ||||||||||  |||||||||||||||||    
T  12164339 tcttctttcaatgtttttgccacatgccacaactgtgtgtgagtattaaagaatgtgtgccacctaagatggttcatgtataagag 12164254  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 39 - 97
Target Start/End: Complemental strand, 42683728 - 42683670
Alignment:
Q  39 tattttagtaattttacatcatatcatcacctcttttcatctcttctttcaatgttttt 97  Q
    |||||||||||||||||||||||||| || |  ||||||||||||||||||||||||||    
T  42683728 tattttagtaattttacatcatatcaccatcctttttcatctcttctttcaatgttttt 42683670  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 93 - 163
Target Start/End: Complemental strand, 3725800 - 3725730
Alignment:
Q  93 tttttgtcacatgtcacaaatgtgtgtggatgtaaaagaatgtatgccacctaaagtggttcatgtataag 163  Q
    |||||| |||||||||||  | ||||||| ||| ||||| | |||||||||||| ||||| ||||||||||    
T  3725800 tttttggcacatgtcacacttatgtgtggttgttaaagagtatatgccacctaaggtggtccatgtataag 3725730  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 107; Significance: 1e-53; HSPs: 24)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 107; E-Value: 1e-53
Query Start/End: Original strand, 26 - 168
Target Start/End: Original strand, 45782709 - 45782851
Alignment:
Q  26 catgtgttaggaatattttagtaattttacatcatatcatcacctcttttcatctcttctttcaatgtttttgtcacatgtcacaaatgtgtgtggatgt 125  Q
    |||||||||||  |||||||||||||||||||||||||||||||  ||||||||||||||||||||||||||||||| |||||||||||||||||| |||    
T  45782709 catgtgttaggggtattttagtaattttacatcatatcatcaccctttttcatctcttctttcaatgtttttgtcacgtgtcacaaatgtgtgtgggtgt 45782808  T
Q  126 aaaagaatgtatgccacctaaagtggttcatgtataagagctc 168  Q
    ||||  |||||||||||||||||||||| ||||||||||||||    
T  45782809 aaaatgatgtatgccacctaaagtggttgatgtataagagctc 45782851  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 23 - 169
Target Start/End: Original strand, 36346611 - 36346756
Alignment:
Q  23 cctcatgtgttaggaatattttagtaattttacatcatatcatcacctcttttcatctcttctttcaatgtttttgtcacatgtcacaaatgtgtgtgga 122  Q
    ||||||||||||||  |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| ||| |||||||||||||| |||     
T  36346611 cctcatgtgttaggggtattttagtaattttacatcatatcatcacct-ttttcatctcttctttcaatgtttttgccacgtgtcacaaatgtgtctggg 36346709  T
Q  123 tgtaaaagaatgtatgccacctaaagtggttcatgtataagagctct 169  Q
    ||||||||  ||||||||||||||  ||||| |||||||||||||||    
T  36346710 tgtaaaagggtgtatgccacctaagatggtttatgtataagagctct 36346756  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 94; E-Value: 7e-46
Query Start/End: Original strand, 19 - 168
Target Start/End: Original strand, 5811205 - 5811354
Alignment:
Q  19 tacacctcatgtgttaggaatattttagtaattttacatcatatcatcacctcttttcatctcttctttcaatgtttttgtcacatgtcacaaatgtgtg 118  Q
    ||||||||||||||||||  |||||||||||||| |||||| ||| ||||| |||||||||||||||||||||||||||| |||||||||||||||||||    
T  5811205 tacacctcatgtgttaggggtattttagtaatttcacatcacatcctcaccccttttcatctcttctttcaatgtttttgccacatgtcacaaatgtgtg 5811304  T
Q  119 tggatgtaaaagaatgtatgccacctaaagtggttcatgtataagagctc 168  Q
    ||| || ||||| ||||||||||||||  |||||| |||||||| |||||    
T  5811305 tgggtgaaaaaggatgtatgccacctatggtggtttatgtataatagctc 5811354  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 94; E-Value: 7e-46
Query Start/End: Original strand, 20 - 165
Target Start/End: Complemental strand, 34828213 - 34828069
Alignment:
Q  20 acacctcatgtgttaggaatattttagtaattttacatcatatcatcacctcttttcatctcttctttcaatgtttttgtcacatgtcacaaatgtgtgt 119  Q
    ||||| ||| |||||||  ||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||| ||| ||||||||||||||||    
T  34828213 acaccccatatgttaggggtattttagtaattttacatcatatcatcatcacttttcatctcttctttcaatgtttttgccacgtgtcacaaatgtgtgt 34828114  T
Q  120 ggatgtaaaagaatgtatgccacctaaagtggttcatgtataagag 165  Q
    ||||||||||| ||||||| |||| || ||||||||||||||||||    
T  34828113 ggatgtaaaaggatgtatg-cacccaaggtggttcatgtataagag 34828069  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 89; E-Value: 7e-43
Query Start/End: Original strand, 26 - 170
Target Start/End: Original strand, 26972252 - 26972396
Alignment:
Q  26 catgtgttaggaatattttagtaattttacatcatatcatcacctcttttcatctcttctttcaatgtttttgtcacatgtcacaaatgtgtgtggatgt 125  Q
    ||||| |||||  ||||| |||||||||||||||||||||||||  ||||||||||| ||||||||||||||| ||| ||||| |||||||||||| |||    
T  26972252 catgtattaggggtatttgagtaattttacatcatatcatcaccctttttcatctctcctttcaatgtttttgccacgtgtcataaatgtgtgtgggtgt 26972351  T
Q  126 aaaagaatgtatgccacctaaagtggttcatgtataagagctcta 170  Q
    |||||  |||||||||||||| |||||||||||||||||||||||    
T  26972352 aaaagggtgtatgccacctaaggtggttcatgtataagagctcta 26972396  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 88; E-Value: 3e-42
Query Start/End: Original strand, 41 - 168
Target Start/End: Original strand, 42221027 - 42221154
Alignment:
Q  41 ttttagtaattttacatcatatcatcacctcttttcatctcttctttcaatgtttttgtcacatgtcacaaatgtgtgtggatgtaaaagaatgtatgcc 140  Q
    |||||||||||| |||||||||||||||| ||||| || ||||||||||||||||||| ||| |||||||||||||||||| ||||||| | ||||||||    
T  42221027 ttttagtaatttaacatcatatcatcacccctttttatatcttctttcaatgtttttgccacgtgtcacaaatgtgtgtgggtgtaaaaaagtgtatgcc 42221126  T
Q  141 acctaaagtggttcatgtataagagctc 168  Q
    |||||| |||||||||||||||||||||    
T  42221127 acctaaggtggttcatgtataagagctc 42221154  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 20 - 162
Target Start/End: Complemental strand, 31148438 - 31148296
Alignment:
Q  20 acacctcatgtgttaggaatattttagtaattttacatcatatcatcacctcttttcatctcttctttcaatgtttttgtcacatgtcacaaatgtgtgt 119  Q
    ||||| ||| |||||||  |||||||||||||||||||||||||||||||  ||||||||||||||||||||||||||| ||  ||||||||||||||||    
T  31148438 acaccccatatgttaggcttattttagtaattttacatcatatcatcacccattttcatctcttctttcaatgtttttgccatgtgtcacaaatgtgtgt 31148339  T
Q  120 ggatgtaaaagaatgtatgccacctaaagtggttcatgtataa 162  Q
    || ||||||||  ||||||||||||||  ||||||||||||||    
T  31148338 gggtgtaaaagggtgtatgccacctaagatggttcatgtataa 31148296  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 26 - 168
Target Start/End: Complemental strand, 34108568 - 34108426
Alignment:
Q  26 catgtgttaggaatattttagtaattttacatcatatcatcacctcttttcatctcttctttcaatgtttttgtcacatgtcacaaatgtgtgtggatgt 125  Q
    ||||| |||||  ||||| |||||||||||||||||||||||||  ||||||||||||| |||||||||||||||| ||||||||||| ||||||| |||    
T  34108568 catgtattaggggtatttgagtaattttacatcatatcatcaccctttttcatctcttcattcaatgtttttgtcatatgtcacaaatatgtgtgggtgt 34108469  T
Q  126 aaaagaatgtatgccacctaaagtggttcatgtataagagctc 168  Q
    |||||  |||||| ||||||| |||||||||||||||||||||    
T  34108468 aaaagggtgtatgtcacctaaggtggttcatgtataagagctc 34108426  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 86; E-Value: 4e-41
Query Start/End: Original strand, 39 - 168
Target Start/End: Original strand, 28307557 - 28307686
Alignment:
Q  39 tattttagtaattttacatcatatcatcacctcttttcatctcttctttcaatgtttttgtcacatgtcacaaatgtgtgtggatgtaaaagaatgtatg 138  Q
    |||||||||||||||||||||||||||||||  ||||||||||||||||||||||||||| ||| |||| ||||||||||||| ||||||||  ||||||    
T  28307557 tattttagtaattttacatcatatcatcaccctttttcatctcttctttcaatgtttttgccacgtgtcgcaaatgtgtgtgggtgtaaaagggtgtatg 28307656  T
Q  139 ccacctaaagtggttcatgtataagagctc 168  Q
    |||||||| || ||| ||||||||||||||    
T  28307657 ccacctaaggtagtttatgtataagagctc 28307686  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 25 - 171
Target Start/End: Original strand, 7700525 - 7700671
Alignment:
Q  25 tcatgtgttaggaatattttagtaattttacatcatatcatcacctcttttcatctcttctttcaatgtttttgtcacatgtcacaaatgtgtgtggatg 124  Q
    |||||||||| |  |||||||||||||||| |||||||||||| |  |||| |||||||||||||||||||||| ||| |||||||||||||||||| ||    
T  7700525 tcatgtgttatgggtattttagtaattttatatcatatcatcatccttttttatctcttctttcaatgtttttgccacgtgtcacaaatgtgtgtgggtg 7700624  T
Q  125 taaaagaatgtatgccacctaaagtggttcatgtataagagctctat 171  Q
    ||||||  ||||||||| |||| |||||| |||||||||||||||||    
T  7700625 taaaagggtgtatgccatctaaggtggtttatgtataagagctctat 7700671  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 19 - 168
Target Start/End: Complemental strand, 13108296 - 13108148
Alignment:
Q  19 tacacctcatgtgttaggaatattttagtaattttacatcatatcatcacctcttttcatctcttctttcaatgtttttgtcacatgtcacaaatgtgtg 118  Q
    ||||||||||||||||||  |||||||||||||| |||||| ||| ||||| |||| ||||||||||||||| ||||||| |||||||||||||||||||    
T  13108296 tacacctcatgtgttaggggtattttagtaatttcacatcacatcctcaccccttt-catctcttctttcaacgtttttgccacatgtcacaaatgtgtg 13108198  T
Q  119 tggatgtaaaagaatgtatgccacctaaagtggttcatgtataagagctc 168  Q
    ||| ||||||||  |||||||| ||||| |||||| |||||||| |||||    
T  13108197 tgggtgtaaaagggtgtatgccgcctaaggtggtttatgtataacagctc 13108148  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 25 - 168
Target Start/End: Original strand, 7699931 - 7700074
Alignment:
Q  25 tcatgtgttaggaatattttagtaattttacatcatatcatcacctcttttcatctcttctttcaatgtttttgtcacatgtcacaaatgtgtgtggatg 124  Q
    |||||||||| |  |||||||||||||||| |||||||||||| |  |||| |||||||||||||||||||||| ||| |||||||||||||||||| ||    
T  7699931 tcatgtgttatgggtattttagtaattttatatcatatcatcatccttttttatctcttctttcaatgtttttgccacgtgtcacaaatgtgtgtgggtg 7700030  T
Q  125 taaaagaatgtatgccacctaaagtggttcatgtataagagctc 168  Q
    ||||||  ||||||||| |||| |||||| ||||||||||||||    
T  7700031 taaaagggtgtatgccatctaaggtggtttatgtataagagctc 7700074  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 25 - 168
Target Start/End: Original strand, 7700129 - 7700272
Alignment:
Q  25 tcatgtgttaggaatattttagtaattttacatcatatcatcacctcttttcatctcttctttcaatgtttttgtcacatgtcacaaatgtgtgtggatg 124  Q
    |||||||||| |  |||||||||||||||| |||||||||||| |  |||| |||||||||||||||||||||| ||| |||||||||||||||||| ||    
T  7700129 tcatgtgttatgggtattttagtaattttatatcatatcatcatccttttttatctcttctttcaatgtttttgccacgtgtcacaaatgtgtgtgggtg 7700228  T
Q  125 taaaagaatgtatgccacctaaagtggttcatgtataagagctc 168  Q
    ||||||  ||||||||| |||| |||||| ||||||||||||||    
T  7700229 taaaagggtgtatgccatctaaggtggtttatgtataagagctc 7700272  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 25 - 168
Target Start/End: Original strand, 7700327 - 7700470
Alignment:
Q  25 tcatgtgttaggaatattttagtaattttacatcatatcatcacctcttttcatctcttctttcaatgtttttgtcacatgtcacaaatgtgtgtggatg 124  Q
    |||||||||| |  |||||||||||||||| |||||||||||| |  |||| |||||||||||||||||||||| ||| |||||||||||||||||| ||    
T  7700327 tcatgtgttatgggtattttagtaattttatatcatatcatcatccttttttatctcttctttcaatgtttttgccacgtgtcacaaatgtgtgtgggtg 7700426  T
Q  125 taaaagaatgtatgccacctaaagtggttcatgtataagagctc 168  Q
    ||||||  ||||||||| |||| |||||| ||||||||||||||    
T  7700427 taaaagggtgtatgccatctaaggtggtttatgtataagagctc 7700470  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 39 - 162
Target Start/End: Complemental strand, 23980260 - 23980137
Alignment:
Q  39 tattttagtaattttacatcatatcatcacctcttttcatctcttctttcaatgtttttgtcacatgtcacaaatgtgtgtggatgtaaaagaatgtatg 138  Q
    |||||||||||||| |||||| ||| ||||| |||||||||||||||||||||||||||| |||||||||||||||||||||| ||||||||  ||||||    
T  23980260 tattttagtaatttcacatcacatcctcaccccttttcatctcttctttcaatgtttttgccacatgtcacaaatgtgtgtgggtgtaaaagggtgtatg 23980161  T
Q  139 ccacctaaagtggttcatgtataa 162  Q
    |||||||  |||||| ||||||||    
T  23980160 ccacctatggtggtttatgtataa 23980137  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 18 - 168
Target Start/End: Complemental strand, 30887850 - 30887700
Alignment:
Q  18 atacacctcatgtgttaggaatattttagtaattttacatcatatcatcacctcttttcatctcttctttcaatgtttttgtcacatgtcacaaatgtgt 117  Q
    ||||||| ||||| ||||   ||||| |||||||||||||||||||||||||  ||||||||||||| |||||||||||||  || |||||||||||| |    
T  30887850 atacaccccatgtattagaggtatttaagtaattttacatcatatcatcaccctttttcatctcttcattcaatgtttttgctacgtgtcacaaatgtat 30887751  T
Q  118 gtggatgtaaaagaatgtatgccacctaaagtggttcatgtataagagctc 168  Q
    |||| ||||||||  ||||||||||||||  | ||||||||||||||||||    
T  30887750 gtgggtgtaaaagtgtgtatgccacctaagattgttcatgtataagagctc 30887700  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 18 - 168
Target Start/End: Complemental strand, 15020429 - 15020282
Alignment:
Q  18 atacacctcatgtgttaggaatattttagtaattttacatcatatcatcacctcttttcatctcttctttcaatgtttttgtcacatgtcacaaatgtgt 117  Q
    ||||| ||||||||||||| ||||||||||||||| |||||||||| ||||| | |||| ||||||||||||||||||||| || ||||||||||  |||    
T  15020429 atacatctcatgtgttagggatattttagtaatttcacatcatatcttcacc-cctttcgtctcttctttcaatgtttttgccatatgtcacaaa--tgt 15020333  T
Q  118 gtggatgtaaaagaatgtatgccacctaaagtggttcatgtataagagctc 168  Q
    |||| ||||||||  |||||||||||||  |||||| |||||||| |||||    
T  15020332 gtgggtgtaaaaggttgtatgccacctatggtggtttatgtataacagctc 15020282  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 67; E-Value: 9e-30
Query Start/End: Original strand, 18 - 164
Target Start/End: Original strand, 21807363 - 21807509
Alignment:
Q  18 atacacctcatgtgttaggaatattttagtaattttacatcatatcatcacctcttttcatctcttctttcaatgtttttgtcacatgtcacaaatgtgt 117  Q
    ||||||| || ||||||||  |||||||||||||| |||| | ||||||| |  |||||||||||||||||||| |||||| ||||| |||||||| |||    
T  21807363 atacaccccacgtgttaggggtattttagtaatttcacataacatcatcatccattttcatctcttctttcaatatttttgccacatatcacaaatttgt 21807462  T
Q  118 gtggatgtaaaagaatgtatgccacctaaagtggttcatgtataaga 164  Q
    |||| |||||||   ||||||||| |||| |||||||||||||||||    
T  21807463 gtgggtgtaaaatggtgtatgccatctaaggtggttcatgtataaga 21807509  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 19 - 126
Target Start/End: Complemental strand, 46475174 - 46475066
Alignment:
Q  19 tacacctcatgtgtta-ggaatattttagtaattttacatcatatcatcacctcttttcatctcttctttcaatgtttttgtcacatgtcacaaatgtgt 117  Q
    |||| ||||||||||| ||  |||||||||||||| |||||| ||| ||||| ||||||||||||||||||||||||||||| |||||||||||||||||    
T  46475174 tacatctcatgtgttatggggtattttagtaatttcacatcacatcgtcaccccttttcatctcttctttcaatgtttttgttacatgtcacaaatgtgt 46475075  T
Q  118 gtggatgta 126  Q
     ||| ||||    
T  46475074 atgggtgta 46475066  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 57; E-Value: 9e-24
Query Start/End: Original strand, 26 - 146
Target Start/End: Complemental strand, 36957571 - 36957451
Alignment:
Q  26 catgtgttaggaatattttagtaattttacatcatatcatcacctcttttcatctcttctttcaatgtttttgtcacatgtcacaaatgtgtgtggatgt 125  Q
    |||||||| ||  ||||||||||||||||||| | || |||| |  ||||||||||||||| |||| |||||||||| |||||||||| ||| |||||||    
T  36957571 catgtgttgggggtattttagtaattttacattacattatcatccattttcatctcttcttacaatatttttgtcacgtgtcacaaatatgtatggatgt 36957472  T
Q  126 aaaagaatgtatgccacctaa 146  Q
    |||||  ||||||||||||||    
T  36957471 aaaagggtgtatgccacctaa 36957451  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 38 - 163
Target Start/End: Complemental strand, 38321139 - 38321014
Alignment:
Q  38 atattttagtaattttacatcatatcatcacctcttttcatctcttctttcaatgtttttgtcacatgtcacaaatgtgtgtggatgtaaaagaatgtat 137  Q
    ||||||||||| ||| |||||| | ||||||||| | |||| ||||||||||||||||||| |||||||||||| ||| ||||| ||| |||   |||||    
T  38321139 atattttagtactttcacatcacaccatcacctcctctcatatcttctttcaatgtttttgccacatgtcacaattgtatgtgggtgttaaaatgtgtat 38321040  T
Q  138 gccacctaaagtggttcatgtataag 163  Q
    |||||||||  ||||| |||||||||    
T  38321039 gccacctaagatggttaatgtataag 38321014  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 38 - 130
Target Start/End: Original strand, 20086689 - 20086781
Alignment:
Q  38 atattttagtaattttacatcatatcatcacctcttttcatctcttctttcaatgtttttgtcacatgtcacaaatgtgtgtggatgtaaaag 130  Q
    ||||||||||||||| |||||| ||||||||| ||||| ||||||||||| |||||||||| || ||||| ||||||| ||||| ||||||||    
T  20086689 atattttagtaatttcacatcacatcatcacccctttttatctcttcttttaatgtttttgccagatgtctcaaatgtatgtgggtgtaaaag 20086781  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 73 - 126
Target Start/End: Original strand, 42950109 - 42950162
Alignment:
Q  73 tttcatctcttctttcaatgtttttgtcacatgtcacaaatgtgtgtggatgta 126  Q
    ||||||||||| ||||||||| |||| ||||| |||||||||||||||| ||||    
T  42950109 tttcatctcttttttcaatgtatttgccacatatcacaaatgtgtgtgggtgta 42950162  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 26 - 69
Target Start/End: Original strand, 29953621 - 29953664
Alignment:
Q  26 catgtgttaggaatattttagtaattttacatcatatcatcacc 69  Q
    ||||| ||||| |||||| |||||||||||||||||||||||||    
T  29953621 catgtattagggatatttgagtaattttacatcatatcatcacc 29953664  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 103; Significance: 3e-51; HSPs: 15)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 103; E-Value: 3e-51
Query Start/End: Original strand, 26 - 168
Target Start/End: Complemental strand, 49243957 - 49243815
Alignment:
Q  26 catgtgttaggaatattttagtaattttacatcatatcatcacctcttttcatctcttctttcaatgtttttgtcacatgtcacaaatgtgtgtggatgt 125  Q
    ||||| |||||  |||||||||||||||||||||||||||||| | |||| |||||||||||||||||||||| ||||||||||||||||||||||||||    
T  49243957 catgtattaggggtattttagtaattttacatcatatcatcacttttttttatctcttctttcaatgtttttgccacatgtcacaaatgtgtgtggatgt 49243858  T
Q  126 aaaagaatgtatgccacctaaagtggttcatgtataagagctc 168  Q
    |||||  |||||||||||||| |||||||||||||||||||||    
T  49243857 aaaagggtgtatgccacctaaggtggttcatgtataagagctc 49243815  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 98; E-Value: 3e-48
Query Start/End: Original strand, 23 - 168
Target Start/End: Complemental strand, 3672419 - 3672274
Alignment:
Q  23 cctcatgtgttaggaatattttagtaattttacatcatatcatcacctcttttcatctcttctttcaatgtttttgtcacatgtcacaaatgtgtgtgga 122  Q
    |||||||| |||||  ||||| ||||||| |||||||||||||||||  ||||||||||||||||||||||||||| ||| |||||||||||||||||||    
T  3672419 cctcatgtattaggggtatttgagtaattatacatcatatcatcaccctttttcatctcttctttcaatgtttttgccacgtgtcacaaatgtgtgtgga 3672320  T
Q  123 tgtaaaagaatgtatgccacctaaagtggttcatgtataagagctc 168  Q
    ||||||||  |||||||||||||| |||||||||||||||||||||    
T  3672319 tgtaaaagggtgtatgccacctaaggtggttcatgtataagagctc 3672274  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 91; E-Value: 4e-44
Query Start/End: Original strand, 19 - 169
Target Start/End: Original strand, 21390997 - 21391147
Alignment:
Q  19 tacacctcatgtgttaggaatattttagtaattttacatcatatcatcacctcttttcatctcttctttcaatgtttttgtcacatgtcacaaatgtgtg 118  Q
    ||||||||||||||||||  ||||||||||||||||||||||||  ||||   |||||||||||||||||||| |||||| ||| |||||||||||||||    
T  21390997 tacacctcatgtgttaggggtattttagtaattttacatcatatattcactcattttcatctcttctttcaatatttttgccacgtgtcacaaatgtgtg 21391096  T
Q  119 tggatgtaaaagaatgtatgccacctaaagtggttcatgtataagagctct 169  Q
    ||| ||||||||  ||||||||| |||| ||||||||||||||||||||||    
T  21391097 tgggtgtaaaagggtgtatgccatctaaggtggttcatgtataagagctct 21391147  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 88; E-Value: 3e-42
Query Start/End: Original strand, 26 - 169
Target Start/End: Original strand, 28093145 - 28093288
Alignment:
Q  26 catgtgttaggaatattttagtaattttacatcatatcatcacctcttttcatctcttctttcaatgtttttgtcacatgtcacaaatgtgtgtggatgt 125  Q
    ||||| |||||  ||||| |||| ||||||||||||||||||||  ||||||||||| ||||||||||||||| ||| |||||||||||||||||| |||    
T  28093145 catgtattaggggtatttgagtatttttacatcatatcatcaccctttttcatctctcctttcaatgtttttgccacgtgtcacaaatgtgtgtgggtgt 28093244  T
Q  126 aaaagaatgtatgccacctaaagtggttcatgtataagagctct 169  Q
    |||||  |||||||||||||| ||||||||||||||||||||||    
T  28093245 aaaagggtgtatgccacctaaggtggttcatgtataagagctct 28093288  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 19 - 169
Target Start/End: Complemental strand, 44275855 - 44275705
Alignment:
Q  19 tacacctcatgtgttaggaatattttagtaattttacatcatatcatcacctcttttcatctcttctttcaatgtttttgtcacatgtcacaaatgtgtg 118  Q
    |||||| |||||||||||  |||||||||||||||||||||||||||||||  |||| ||||||||||||||| |||||| ||| |||||||||||||||    
T  44275855 tacaccccatgtgttaggggtattttagtaattttacatcatatcatcaccctttttaatctcttctttcaatatttttggcacgtgtcacaaatgtgtg 44275756  T
Q  119 tggatgtaaaagaatgtatgccacctaaagtggttcatgtataagagctct 169  Q
    ||  |||||||   | |||||||||||| |||||| |||||||||||||||    
T  44275755 tgagtgtaaaatggtatatgccacctaaggtggtttatgtataagagctct 44275705  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 81; E-Value: 4e-38
Query Start/End: Original strand, 26 - 170
Target Start/End: Complemental strand, 6112772 - 6112628
Alignment:
Q  26 catgtgttaggaatattttagtaattttacatcatatcatcacctcttttcatctcttctttcaatgtttttgtcacatgtcacaaatgtgtgtggatgt 125  Q
    ||||| |||||  ||||| ||||||||||||||||||||||| |  ||||||||||||||||||||||||||| ||| |||||||||| ||||||| |||    
T  6112772 catgtattaggggtatttgagtaattttacatcatatcatcatcctttttcatctcttctttcaatgtttttgccacgtgtcacaaatatgtgtgggtgt 6112673  T
Q  126 aaaagaatgtatgccacctaaagtggttcatgtataagagctcta 170  Q
    ||||   ||||||||| |||| |||||||||||||||||||||||    
T  6112672 aaaatggtgtatgccatctaaggtggttcatgtataagagctcta 6112628  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 79; E-Value: 6e-37
Query Start/End: Original strand, 39 - 169
Target Start/End: Complemental strand, 46192488 - 46192358
Alignment:
Q  39 tattttagtaattttacatcatatcatcacctcttttcatctcttctttcaatgtttttgtcacatgtcacaaatgtgtgtggatgtaaaagaatgtatg 138  Q
    ||||||| | |||| |||||| || |||||| ||||| |||||||||||||||||||||| |||||||||||||||||||||| ||||||||  ||||||    
T  46192488 tattttaatcatttcacatcacattatcacccctttttatctcttctttcaatgtttttgccacatgtcacaaatgtgtgtgggtgtaaaagggtgtatg 46192389  T
Q  139 ccacctaaagtggttcatgtataagagctct 169  Q
    |||||||| ||| ||||||||||||||||||    
T  46192388 ccacctaaggtgattcatgtataagagctct 46192358  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 39 - 168
Target Start/End: Original strand, 45829319 - 45829448
Alignment:
Q  39 tattttagtaattttacatcatatcatcacctcttttcatctcttctttcaatgtttttgtcacatgtcacaaatgtgtgtggatgtaaaagaatgtatg 138  Q
    ||||||| | |||| |||||| || |||||| ||||| |||||||||||||||||||||| |||||||||||||||||||||| |||||||   ||||||    
T  45829319 tattttaatcatttcacatcacattatcacccctttttatctcttctttcaatgtttttgccacatgtcacaaatgtgtgtgggtgtaaaaaggtgtatg 45829418  T
Q  139 ccacctaaagtggttcatgtataagagctc 168  Q
     |||||||||||||||||||||||||||||    
T  45829419 tcacctaaagtggttcatgtataagagctc 45829448  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 41 - 169
Target Start/End: Complemental strand, 35545039 - 35544911
Alignment:
Q  41 ttttagtaattttacatcatatcatcacctcttttcatctcttctttcaatgtttttgtcacatgtcacaaatgtgtgtggatgtaaaagaatgtatgcc 140  Q
    ||||||||||||||||||||||||||||| ||||| || ||||||||||||||||||| ||| | |||||||||| |||||||||||||   ||||| ||    
T  35545039 ttttagtaattttacatcatatcatcacccctttttatatcttctttcaatgtttttgccacgtatcacaaatgtatgtggatgtaaaatggtgtatacc 35544940  T
Q  141 acctaaagtggttcatgtataagagctct 169  Q
    ||||||  |||||||||||||||||||||    
T  35544939 acctaagatggttcatgtataagagctct 35544911  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 39 - 169
Target Start/End: Complemental strand, 7217894 - 7217764
Alignment:
Q  39 tattttagtaattttacatcatatcatcacctcttttcatctcttctttcaatgtttttgtcacatgtcacaaatgtgtgtggatgtaaaagaatgtatg 138  Q
    |||||||||||||||||||||||||||||||  |||| ||||||| ||| |||||||||| ||| |||||||||||||||| | ||| ||||  ||||||    
T  7217894 tattttagtaattttacatcatatcatcacccttttttatctcttattttaatgtttttgccacgtgtcacaaatgtgtgtaggtgttaaagggtgtatg 7217795  T
Q  139 ccacctaaagtggttcatgtataagagctct 169  Q
    |||||||| |||||| |||||||||||||||    
T  7217794 ccacctaaggtggtttatgtataagagctct 7217764  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 38 - 163
Target Start/End: Complemental strand, 51038894 - 51038768
Alignment:
Q  38 atattttagtaattttacatcatatcatcacctc-ttttcatctcttctttcaatgtttttgtcacatgtcacaaatgtgtgtggatgtaaaagaatgta 136  Q
    ||||||||||||||| |||||| | ||||||| | |||||||||||||||||||||||||||||||||||||||| ||||||||| ||| ||||  ||||    
T  51038894 atattttagtaatttcacatcacaccatcacccccttttcatctcttctttcaatgtttttgtcacatgtcacaattgtgtgtgggtgtcaaagtttgta 51038795  T
Q  137 tgccacctaaagtggttcatgtataag 163  Q
    |||||||||| ||||| ||| ||||||    
T  51038794 tgccacctaaggtggtccatatataag 51038768  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 19 - 169
Target Start/End: Original strand, 52191242 - 52191392
Alignment:
Q  19 tacacctcatgtgttaggaatattttagtaattttacatcatatcatcacctcttttcatctcttctttcaatgtttttgtcacatgtcacaaatgtgtg 118  Q
    |||||| ||| |||||||| ||||||||||||||  ||||| ||||||| ||| | | |||  |||||||||||||||||||||||||||||| | ||||    
T  52191242 tacaccccatatgttaggagtattttagtaatttcgcatcacatcatcatctcctcttatcctttctttcaatgtttttgtcacatgtcacaattctgtg 52191341  T
Q  119 tggatgtaaaagaatgtatgccacctaaagtggttcatgtataagagctct 169  Q
    ||| ||| |||   | |||||||||||| ||||| |||||||||| |||||    
T  52191342 tggctgttaaaaggtatatgccacctaaggtggtccatgtataagggctct 52191392  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 39 - 163
Target Start/End: Complemental strand, 54849917 - 54849793
Alignment:
Q  39 tattttagtaattttacatcatatcatca-cctcttttcatctcttctttcaatgtttttgtcacatgtcacaaatgtgtgtggatgtaaaagaatgtat 137  Q
    ||||||| |||||| |||||| ||||||| ||||| | |||||||||||||||| |||||||||| |||||||| || |||||| | | ||||  ||||     
T  54849917 tattttaataatttcacatcacatcatcatcctctct-catctcttctttcaatatttttgtcacttgtcacaactgcgtgtgggtatcaaagtgtgtac 54849819  T
Q  138 gccacctaaagtggttcatgtataag 163  Q
    || | |||| ||||||||||||||||    
T  54849818 gctatctaaggtggttcatgtataag 54849793  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 99 - 169
Target Start/End: Original strand, 25437007 - 25437077
Alignment:
Q  99 tcacatgtcacaaatgtgtgtggatgtaaaagaatgtatgccacctaaagtggttcatgtataagagctct 169  Q
    ||||||||||||| ||||| ||||||| |||   |||||| ||||||| ||||| |||||||||| |||||    
T  25437007 tcacatgtcacaattgtgtatggatgttaaaaggtgtatgtcacctaaggtggtccatgtataagggctct 25437077  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 85 - 163
Target Start/End: Complemental strand, 36157918 - 36157840
Alignment:
Q  85 tttcaatgtttttgtcacatgtcacaaatgtgtgtggatgtaaaagaatgtatgccacctaaagtggttcatgtataag 163  Q
    |||||||||||||||||| | |||||| | ||| ||  ||| ||||| ||||||||||||||||| || ||| ||||||    
T  36157918 tttcaatgtttttgtcacgtatcacaattatgtatgagtgtcaaagagtgtatgccacctaaagtcgtccatatataag 36157840  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 103; Significance: 3e-51; HSPs: 12)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 103; E-Value: 3e-51
Query Start/End: Original strand, 23 - 165
Target Start/End: Complemental strand, 44958258 - 44958116
Alignment:
Q  23 cctcatgtgttaggaatattttagtaattttacatcatatcatcacctcttttcatctcttctttcaatgtttttgtcacatgtcacaaatgtgtgtgga 122  Q
    ||||||||||||||  |||||||||||||||||||||||||||||||  |||| |||||||||||||||||||||| ||||||||||||||||||||||     
T  44958258 cctcatgtgttaggggtattttagtaattttacatcatatcatcacccttttttatctcttctttcaatgtttttgccacatgtcacaaatgtgtgtggg 44958159  T
Q  123 tgtaaaagaatgtatgccacctaaagtggttcatgtataagag 165  Q
    ||||||||  |||||||||||||| ||||||||||||||||||    
T  44958158 tgtaaaagggtgtatgccacctaaggtggttcatgtataagag 44958116  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 98; E-Value: 3e-48
Query Start/End: Original strand, 39 - 168
Target Start/End: Complemental strand, 33732698 - 33732569
Alignment:
Q  39 tattttagtaattttacatcatatcatcacctcttttcatctcttctttcaatgtttttgtcacatgtcacaaatgtgtgtggatgtaaaagaatgtatg 138  Q
    |||||||||||||||||||||||||| ||||  ||||||||||||||||||||||||||| |||||||||||||||||||||| ||||||||  ||||||    
T  33732698 tattttagtaattttacatcatatcaccaccctttttcatctcttctttcaatgtttttgccacatgtcacaaatgtgtgtgggtgtaaaagggtgtatg 33732599  T
Q  139 ccacctaaagtggttcatgtataagagctc 168  Q
    |||||||| |||||||||||||||||||||    
T  33732598 ccacctaaggtggttcatgtataagagctc 33732569  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 97; E-Value: 1e-47
Query Start/End: Original strand, 170 - 308
Target Start/End: Complemental strand, 3779379 - 3779248
Alignment:
Q  170 atttaatatgactatcaattcaatcaaacttataaaatttgcaagtatatattatgtatccatgttactttgcttatatcagaagatccgcatctaacta 269  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||       |||||||||||||||||||||       
T  3779379 atttaatatgactatcaattcaatcaaacttataaaatttgcaagtatatattatgtatccatgttact-------tatcagaagatccgcatctaaaat 3779287  T
Q  270 ctatttataaaatttaaccaaaactttttcatggaccaa 308  Q
    ||||||||||||||||||||||||||||| |||||||||    
T  3779286 ctatttataaaatttaaccaaaacttttttatggaccaa 3779248  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 19 - 169
Target Start/End: Complemental strand, 16089970 - 16089821
Alignment:
Q  19 tacacctcatgtgttaggaatattttagtaattttacatcatatcatcacctcttttcatctcttctttcaatgtttttgtcacatgtcacaaatgtgtg 118  Q
    |||||| |||||||||||  |||||||||||||||||||||||||| ||||| |||| |||||||||||||||||||||| ||| |||||||||||||||    
T  16089970 tacaccccatgtgttaggggtattttagtaattttacatcatatcaccacctttttt-atctcttctttcaatgtttttgccacgtgtcacaaatgtgtg 16089872  T
Q  119 tggatgtaaaagaatgtatgccacctaaagtggttcatgtataagagctct 169  Q
    ||| ||||||||  |||||||||| ||| ||||||||||||||||||||||    
T  16089871 tgggtgtaaaagggtgtatgccacttaaggtggttcatgtataagagctct 16089821  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 94; E-Value: 7e-46
Query Start/End: Original strand, 19 - 168
Target Start/End: Complemental strand, 36315710 - 36315561
Alignment:
Q  19 tacacctcatgtgttaggaatattttagtaattttacatcatatcatcacctcttttcatctcttctttcaatgtttttgtcacatgtcacaaatgtgtg 118  Q
    |||||||||||||| |||  ||||||| | |||| |||||| || |||||||||||| |||||||||||||||||||||| |||||||||||||||||||    
T  36315710 tacacctcatgtgtcaggggtattttaatcatttcacatcacattatcacctctttttatctcttctttcaatgtttttgccacatgtcacaaatgtgtg 36315611  T
Q  119 tggatgtaaaagaatgtatgccacctaaagtggttcatgtataagagctc 168  Q
    ||| ||||||||  |||||||||||||| |||||||||||||||||||||    
T  36315610 tgggtgtaaaagggtgtatgccacctaaggtggttcatgtataagagctc 36315561  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 26 - 169
Target Start/End: Complemental strand, 14573137 - 14572994
Alignment:
Q  26 catgtgttaggaatattttagtaattttacatcatatcatcacctcttttcatctcttctttcaatgtttttgtcacatgtcacaaatgtgtgtggatgt 125  Q
    |||||||||||  |||||||||||||||||||||||||||||||  ||| |||||||||||||||||||||||  || ||||||||||||||||||||||    
T  14573137 catgtgttaggggtattttagtaattttacatcatatcatcacccttttccatctcttctttcaatgtttttgctacgtgtcacaaatgtgtgtggatgt 14573038  T
Q  126 aaaagaatgtatgccacctaaagtggttcatgtataagagctct 169  Q
    |||||  || ||||||||||| |||||| |||||||||||||||    
T  14573037 aaaagggtggatgccacctaaggtggtttatgtataagagctct 14572994  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 26 - 170
Target Start/End: Original strand, 37498912 - 37499058
Alignment:
Q  26 catgtgttaggaatattttagtaattttacatcatatcatcacc-tctttt-catctcttctttcaatgtttttgtcacatgtcacaaatgtgtgtggat 123  Q
    |||||||||||  ||||||||||||||||||||||||||||||| |||||| ||||||||||||||||||||||| |||||||||||||||||||||  |    
T  37498912 catgtgttaggggtattttagtaattttacatcatatcatcaccctctttttcatctcttctttcaatgtttttgccacatgtcacaaatgtgtgtgagt 37499011  T
Q  124 gtaaaagaatgtatgccacctaaagtggttcatgtataagagctcta 170  Q
    ||||||| ||||||||||  |||  ||||| || |||||||||||||    
T  37499012 gtaaaaggatgtatgccagttaagatggttgatatataagagctcta 37499058  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 19 - 169
Target Start/End: Original strand, 3830939 - 3831087
Alignment:
Q  19 tacacctcatgtgttaggaatattttagtaattttacatcatatcatcacctcttttcatctcttctttcaatgtttttgtcacatgtcacaaatgtgtg 118  Q
    |||||| |||||||||||  ||| ||||||||||||||||| || |||||| |||||||||||||||||||||||||||| ||| |||||||||  ||||    
T  3830939 tacaccccatgtgttaggggtatattagtaattttacatcagataatcaccacttttcatctcttctttcaatgtttttgccacgtgtcacaaa--tgtg 3831036  T
Q  119 tggatgtaaaagaatgtatgccacctaaagtggttcatgtataagagctct 169  Q
    ||| ||||||||  |||||| ||||||| |||||||||||||||| |||||    
T  3831037 tgggtgtaaaagggtgtatgtcacctaaggtggttcatgtataagtgctct 3831087  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 79; E-Value: 6e-37
Query Start/End: Original strand, 39 - 169
Target Start/End: Original strand, 37914298 - 37914428
Alignment:
Q  39 tattttagtaattttacatcatatcatcacctcttttcatctcttctttcaatgtttttgtcacatgtcacaaatgtgtgtggatgtaaaagaatgtatg 138  Q
    ||||||| | |||| |||||| || |||||| ||||| |||||||||||||||||||||| |||||||||||||||||||||||||||||||  ||||||    
T  37914298 tattttaatcatttcacatcacattatcacccctttttatctcttctttcaatgtttttgccacatgtcacaaatgtgtgtggatgtaaaagggtgtatg 37914397  T
Q  139 ccacctaaagtggttcatgtataagagctct 169  Q
    |||||||| |||||| |||||||| ||||||    
T  37914398 ccacctaaggtggtttatgtataaaagctct 37914428  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 39 - 168
Target Start/End: Original strand, 24137154 - 24137287
Alignment:
Q  39 tattttagtaattttacatcatatcatcacctcttttcatctcttctttcaatgtttttgtcacatgtcacaaatgtgtgtg----gatgtaaaagaatg 134  Q
    |||||||||||||| |||||| ||| ||| | ||||||||||||||||||||||||||||||||||||||||||||||||||    | ||| ||||  ||    
T  24137154 tattttagtaatttcacatcacatcctcatcccttttcatctcttctttcaatgtttttgtcacatgtcacaaatgtgtgtgggtaggtgtcaaagggtg 24137253  T
Q  135 tatgccacctaaagtggttcatgtataagagctc 168  Q
    ||| |||||||| |||||| |||||||| |||||    
T  24137254 tataccacctaaggtggtttatgtataacagctc 24137287  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 64; E-Value: 6e-28
Query Start/End: Original strand, 19 - 174
Target Start/End: Original strand, 6376280 - 6376430
Alignment:
Q  19 tacacctcatgtgttaggaatattttagtaattttacatcatatcatcacctcttttcatctcttctttcaatgtttttgtcacatgtcacaaatgtgtg 118  Q
    |||| ||||||||||||   |||||||||||||| |||||| ||| |||||  |||||||||||||||||||||     | |||||||||||||||||||    
T  6376280 tacatctcatgtgttagaggtattttagtaatttcacatcacatcctcacccattttcatctcttctttcaatg-----gccacatgtcacaaatgtgtg 6376374  T
Q  119 tggatgtaaaagaatgtatgccacctaaagtggttcatgtataagagctctattta 174  Q
    ||| ||||||||  |||||||||||||  |||||| |||||||| ||||| |||||    
T  6376375 tgggtgtaaaagggtgtatgccacctatggtggtttatgtataacagctcaattta 6376430  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 38 - 160
Target Start/End: Complemental strand, 41188899 - 41188777
Alignment:
Q  38 atattttagtaattttacatcatatcatcacctcttttcatctcttctttcaatgtttttgtcacatgtcacaaatgtgtgtggatgtaaaagaatgtat 137  Q
    |||||||||||||||||||||| ||||||| | |||||||| || | |||||||||||||| ||||||||| |||| ||| | ||| ||||||  |||||    
T  41188899 atattttagtaattttacatcacatcatcatcccttttcatatcatttttcaatgtttttgccacatgtcataaatatgtatagatataaaagggtgtat 41188800  T
Q  138 gccacctaaagtggttcatgtat 160  Q
    | ||| |||||||||||||||||    
T  41188799 gtcacataaagtggttcatgtat 41188777  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 99; Significance: 7e-49; HSPs: 14)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 99; E-Value: 7e-49
Query Start/End: Original strand, 23 - 169
Target Start/End: Complemental strand, 10203809 - 10203663
Alignment:
Q  23 cctcatgtgttaggaatattttagtaattttacatcatatcatcacctcttttcatctcttctttcaatgtttttgtcacatgtcacaaatgtgtgtgga 122  Q
    |||||||| ||||| ||||||||||||||||| ||||||||| ||||  |||||||||||||||||||| |||||||||| |||||||||||||||||||    
T  10203809 cctcatgtattagggatattttagtaattttatatcatatcaccaccctttttcatctcttctttcaatatttttgtcacgtgtcacaaatgtgtgtgga 10203710  T
Q  123 tgtaaaagaatgtatgccacctaaagtggttcatgtataagagctct 169  Q
    |||||||| ||||||| ||||||| ||||||||||||||||| ||||    
T  10203709 tgtaaaaggatgtatgtcacctaaggtggttcatgtataagaactct 10203663  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 97; E-Value: 1e-47
Query Start/End: Original strand, 26 - 170
Target Start/End: Complemental strand, 31318947 - 31318803
Alignment:
Q  26 catgtgttaggaatattttagtaattttacatcatatcatcacctcttttcatctcttctttcaatgtttttgtcacatgtcacaaatgtgtgtggatgt 125  Q
    ||||| |||||| ||||| |||||||||||||||||||||||||  ||||||||||||||||||||||||||| ||| ||||||||||||||||||||||    
T  31318947 catgtattaggagtatttgagtaattttacatcatatcatcaccctttttcatctcttctttcaatgtttttgccacgtgtcacaaatgtgtgtggatgt 31318848  T
Q  126 aaaagaatgtatgccacctaaagtggttcatgtataagagctcta 170  Q
    ||||   | |||||||||||| |||||||||||||||||||||||    
T  31318847 aaaaagttatatgccacctaaggtggttcatgtataagagctcta 31318803  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 94; E-Value: 7e-46
Query Start/End: Original strand, 39 - 168
Target Start/End: Complemental strand, 30432468 - 30432339
Alignment:
Q  39 tattttagtaattttacatcatatcatcacctcttttcatctcttctttcaatgtttttgtcacatgtcacaaatgtgtgtggatgtaaaagaatgtatg 138  Q
    ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| ||| |||||||||||||||||| | ||||||  ||||||    
T  30432468 tattttagtaattttacatcatatcatcaccccttttcatctcttctttcaatgtttttgccacgtgtcacaaatgtgtgtgggtataaaagggtgtatg 30432369  T
Q  139 ccacctaaagtggttcatgtataagagctc 168  Q
    ||| |||| |||||||||||||||||||||    
T  30432368 ccatctaaggtggttcatgtataagagctc 30432339  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 23 - 165
Target Start/End: Complemental strand, 12665490 - 12665347
Alignment:
Q  23 cctcatgtgttaggaatattttagtaattttacatcatatcatcacc-tcttttcatctcttctttcaatgtttttgtcacatgtcacaaatgtgtgtgg 121  Q
    ||||||||||||||  ||||||||||||||||||||||||||||||| | |||| |||||||||||||||||||||| ||||||| |||||||||||||     
T  12665490 cctcatgtgttaggggtattttagtaattttacatcatatcatcaccctttttttatctcttctttcaatgtttttgccacatgttacaaatgtgtgtga 12665391  T
Q  122 atgtaaaagaatgtatgccacctaaagtggttcatgtataagag 165  Q
     ||||||||  |||||||||||||| ||||||||||||||||||    
T  12665390 gtgtaaaagggtgtatgccacctaaggtggttcatgtataagag 12665347  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 91; E-Value: 4e-44
Query Start/End: Original strand, 26 - 168
Target Start/End: Complemental strand, 42162740 - 42162598
Alignment:
Q  26 catgtgttaggaatattttagtaattttacatcatatcatcacctcttttcatctcttctttcaatgtttttgtcacatgtcacaaatgtgtgtggatgt 125  Q
    ||||| |||||  ||||| |||||||||||||||||||||||||  ||||||||||||||||||||||||||||||| |||||||||||||| ||| |||    
T  42162740 catgtattaggggtatttgagtaattttacatcatatcatcaccctttttcatctcttctttcaatgtttttgtcacgtgtcacaaatgtgtttgggtgt 42162641  T
Q  126 aaaagaatgtatgccacctaaagtggttcatgtataagagctc 168  Q
    |||||  |||||| ||||||| |||||||||||||||||||||    
T  42162640 aaaagggtgtatgacacctaaggtggttcatgtataagagctc 42162598  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 19 - 165
Target Start/End: Complemental strand, 18184702 - 18184556
Alignment:
Q  19 tacacctcatgtgttaggaatattttagtaattttacatcatatcatcacctcttttcatctcttctttcaatgtttttgtcacatgtcacaaatgtgtg 118  Q
    ||||||||||||||||||  |||||||||||||||| |||||||||||||| |||||||||||||| |||||||||||   ||| |||||||||| ||||    
T  18184702 tacacctcatgtgttaggggtattttagtaattttatatcatatcatcaccccttttcatctcttcattcaatgttttcaccacgtgtcacaaatatgtg 18184603  T
Q  119 tggatgtaaaagaatgtatgccacctaaagtggttcatgtataagag 165  Q
    ||||||||||||  |||||| ||| ||| ||||||||| ||||||||    
T  18184602 tggatgtaaaagggtgtatgtcacttaaggtggttcatatataagag 18184556  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 81; E-Value: 4e-38
Query Start/End: Original strand, 19 - 162
Target Start/End: Complemental strand, 33726161 - 33726017
Alignment:
Q  19 tacacctcatgtgttaggaatattttagtaattttacatcatatcatca-cctcttttcatctcttctttcaatgtttttgtcacatgtcacaaatgtgt 117  Q
    ||||| ||||||||||||  |||||||||||||| |||||| ||| ||| || |||||||||||||||||||||||||||| |||||||||||||||| |    
T  33726161 tacacttcatgtgttaggggtattttagtaatttcacatcacatcgtcatccacttttcatctcttctttcaatgtttttgccacatgtcacaaatgttt 33726062  T
Q  118 gtggatgtaaaagaatgtatgccacctaaagtggttcatgtataa 162  Q
    |||| |||||||   ||||||||||||||||||||| ||||||||    
T  33726061 gtgggtgtaaaaaggtgtatgccacctaaagtggtttatgtataa 33726017  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 40 - 171
Target Start/End: Complemental strand, 43186155 - 43186024
Alignment:
Q  40 attttagtaattttacatcatatcatcacctcttttcatctcttctttcaatgtttttgtcacatgtcacaaatgtgtgtggatgtaaaagaatgtatgc 139  Q
    |||| |||||||||| ||||||||||||||| ||||||||| ||||||||||||||||| ||||| |||||||||||||  | ||||||||| | |||||    
T  43186155 atttgagtaattttatatcatatcatcaccttttttcatcttttctttcaatgtttttgccacatatcacaaatgtgtgcaggtgtaaaagagtatatgc 43186056  T
Q  140 cacctaaagtggttcatgtataagagctctat 171  Q
    |||||||||||||| |||||||||| ||||||    
T  43186055 cacctaaagtggttgatgtataagaactctat 43186024  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 79; E-Value: 6e-37
Query Start/End: Original strand, 30 - 168
Target Start/End: Complemental strand, 36189354 - 36189216
Alignment:
Q  30 tgttaggaatattttagtaattttacatcatatcatcacctcttttcatctcttctttcaatgtttttgtcacatgtcacaaatgtgtgtggatgtaaaa 129  Q
    |||||||  ||||||| |||||||| |||||||||||||  ||||||||||||||||||||| |||||| ||| |||||||||||| ||||| |||||||    
T  36189354 tgttaggggtattttaataattttatatcatatcatcactccttttcatctcttctttcaatatttttgccacgtgtcacaaatgtatgtgggtgtaaaa 36189255  T
Q  130 gaatgtatgccacctaaagtggttcatgtataagagctc 168  Q
    |  ||||||||||||||  ||||||||||||||||||||    
T  36189254 gggtgtatgccacctaagatggttcatgtataagagctc 36189216  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 26 - 167
Target Start/End: Complemental strand, 44081922 - 44081781
Alignment:
Q  26 catgtgttaggaatattttagtaattttacatcatatcatcacctcttttcatctcttctttcaatgtttttgtcacatgtcacaaatgtgtgtggatgt 125  Q
    ||||| |||||  ||||| ||||||||||||| |||||||||||  ||||||||||||||||||||||||||  ||| ||| |||||||||||||| |||    
T  44081922 catgtattaggggtatttgagtaattttacattatatcatcaccctttttcatctcttctttcaatgttttttccacgtgttacaaatgtgtgtgggtgt 44081823  T
Q  126 aaaagaatgtatgccacctaaagtggttcatgtataagagct 167  Q
    |||||  ||||||||||||||  |||||||||||||||||||    
T  44081822 aaaagggtgtatgccacctaagatggttcatgtataagagct 44081781  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 39 - 146
Target Start/End: Original strand, 42668844 - 42668950
Alignment:
Q  39 tattttagtaattttacatcatatcatcacctcttttcatctcttctttcaatgtttttgtcacatgtcacaaatgtgtgtggatgtaaaagaatgtatg 138  Q
    |||| ||||||||| |||||||| |||||||||| | ||| |||||||| |||||||||| ||| |||||||| ||||||||| ||| ||||  ||||||    
T  42668844 tattgtagtaatttcacatcataccatcacctctct-catatcttcttttaatgtttttgccacgtgtcacaattgtgtgtgggtgtcaaagtgtgtatg 42668942  T
Q  139 ccacctaa 146  Q
    ||||||||    
T  42668943 ccacctaa 42668950  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 39 - 163
Target Start/End: Original strand, 3690664 - 3690788
Alignment:
Q  39 tattttagtaattttacatcatatcatcacctcttttcatctcttctttcaatgtttttgtcacatgtcacaaatgtgtgtggatgtaaaagaatgtatg 138  Q
    |||||| |||||||  || || ||||||||||| | ||||||||||||| ||| |||| |  ||||||||||| ||||||||||| | |||| |||||||    
T  3690664 tatttttgtaatttcgcaacacatcatcacctcatctcatctcttcttttaatattttcgctacatgtcacaagtgtgtgtggatatcaaaggatgtatg 3690763  T
Q  139 ccacctaaagtggttcatgtataag 163  Q
     |||||||  || ||||||||||||    
T  3690764 tcacctaagatgattcatgtataag 3690788  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 77 - 163
Target Start/End: Original strand, 31547 - 31633
Alignment:
Q  77 atctcttctttcaatgtttttgtcacatgtcacaaatgtgtgtggatgtaaaagaatgtatgccacctaaagtggttcatgtataag 163  Q
    |||||||||||||||||||||| |||||||||||| ||| ||||| ||| ||||  ||||||| ||||||  |||| ||| ||||||    
T  31547 atctcttctttcaatgtttttgccacatgtcacaattgtatgtgggtgtcaaagtgtgtatgctacctaagatggtacatatataag 31633  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 27 - 120
Target Start/End: Original strand, 38845073 - 38845165
Alignment:
Q  27 atgtgttaggaatattttagtaattttacatcatatcatcacctcttttcatctcttctttcaatgtttttgtcacatgtcacaaatgtgtgtg 120  Q
    ||||||||||  ||||||||||||||  ||||| ||||||||| || || |||| |||||||||| |||||  |||||||||||| ||||||||    
T  38845073 atgtgttagggttattttagtaatttctcatcacatcatcacccctctt-atcttttctttcaatattttttccacatgtcacaattgtgtgtg 38845165  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 99; Significance: 7e-49; HSPs: 23)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 99; E-Value: 7e-49
Query Start/End: Original strand, 23 - 169
Target Start/End: Original strand, 36370384 - 36370530
Alignment:
Q  23 cctcatgtgttaggaatattttagtaattttacatcatatcatcacctcttttcatctcttctttcaatgtttttgtcacatgtcacaaatgtgtgtgga 122  Q
    |||||||| |||||  ||||| |||||||||||||||||||||||||  ||||||||||||||||||||||||||||||||||||||||||||||||||     
T  36370384 cctcatgtattaggggtatttgagtaattttacatcatatcatcaccctttttcatctcttctttcaatgtttttgtcacatgtcacaaatgtgtgtggg 36370483  T
Q  123 tgtaaaagaatgtatgccacctaaagtggttcatgtataagagctct 169  Q
    |||||||   |||||| ||||||| ||||||||||||||||||||||    
T  36370484 tgtaaaaaggtgtatgacacctaaggtggttcatgtataagagctct 36370530  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 26 - 169
Target Start/End: Original strand, 46111993 - 46112136
Alignment:
Q  26 catgtgttaggaatattttagtaattttacatcatatcatcacctcttttcatctcttctttcaatgtttttgtcacatgtcacaaatgtgtgtggatgt 125  Q
    ||||| |||||  |||||||||||||||||||||||||||||||  ||||||||||||||||||||||||||| ||||||||||||||||||||||||||    
T  46111993 catgtattaggggtattttagtaattttacatcatatcatcaccctttttcatctcttctttcaatgtttttgccacatgtcacaaatgtgtgtggatgt 46112092  T
Q  126 aaaagaatgtatgccacctaaagtggttcatgtataagagctct 169  Q
    ||||   |||||| |||||||  |||||||||||||||| ||||    
T  46112093 aaaatggtgtatgtcacctaagatggttcatgtataagaactct 46112136  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 19 - 169
Target Start/End: Original strand, 51339825 - 51339973
Alignment:
Q  19 tacacctcatgtgttaggaatattttagtaattttacatcatatcatcacctcttttcatctcttctttcaatgtttttgtcacatgtcacaaatgtgtg 118  Q
    ||||| |||||||||||   |||||||||||||||||||||||||||||||  ||||||||||||||||||||||||||| ||| |||||||||  ||||    
T  51339825 tacacatcatgtgttagaggtattttagtaattttacatcatatcatcaccctttttcatctcttctttcaatgtttttgccacgtgtcacaaa--tgtg 51339922  T
Q  119 tggatgtaaaagaatgtatgccacctaaagtggttcatgtataagagctct 169  Q
    ||| |||||||| ||||||||||||||| |||||| |||||||||||||||    
T  51339923 tgggtgtaaaaggatgtatgccacctaaggtggtttatgtataagagctct 51339973  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 91; E-Value: 4e-44
Query Start/End: Original strand, 39 - 177
Target Start/End: Complemental strand, 44000118 - 43999980
Alignment:
Q  39 tattttagtaattttacatcatatcatcacctcttttcatctcttctttcaatgtttttgtcacatgtcacaaatgtgtgtggatgtaaaagaatgtatg 138  Q
    ||||| |||||||||||||||||||||||||  ||||||||||||||||||||||||||| ||| |||||||||||||||||| |||||||   ||||||    
T  44000118 tatttgagtaattttacatcatatcatcaccctttttcatctcttctttcaatgtttttgccacgtgtcacaaatgtgtgtgggtgtaaaaaggtgtatg 44000019  T
Q  139 ccacctaaagtggttcatgtataagagctctatttaata 177  Q
     ||||||| ||||||||||||||||||||||||| ||||    
T  44000018 acacctaaggtggttcatgtataagagctctattcaata 43999980  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 23 - 168
Target Start/End: Complemental strand, 22894825 - 22894680
Alignment:
Q  23 cctcatgtgttaggaatattttagtaattttacatcatatcatcacctcttttcatctcttctttcaatgtttttgtcacatgtcacaaatgtgtgtgga 122  Q
    |||||||| |||||  ||||| ||||||| ||||||||||||||| |  ||||||||||||||||||||||||||| ||| ||||||||||||||||||     
T  22894825 cctcatgtattaggggtatttgagtaattatacatcatatcatcatcctttttcatctcttctttcaatgtttttgccacgtgtcacaaatgtgtgtggg 22894726  T
Q  123 tgtaaaagaatgtatgccacctaaagtggttcatgtataagagctc 168  Q
    ||||||||  |||||||||||||| |||||||||||||||||||||    
T  22894725 tgtaaaagggtgtatgccacctaaggtggttcatgtataagagctc 22894680  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 39 - 168
Target Start/End: Original strand, 34749960 - 34750089
Alignment:
Q  39 tattttagtaattttacatcatatcatcacctcttttcatctcttctttcaatgtttttgtcacatgtcacaaatgtgtgtggatgtaaaagaatgtatg 138  Q
    ||||| |||||||||||||||||||||||||  ||||||||||||||||||||||||||| ||| |||||||||| ||||||| ||||||||  ||||||    
T  34749960 tatttgagtaattttacatcatatcatcaccctttttcatctcttctttcaatgtttttgccacgtgtcacaaatatgtgtgggtgtaaaagggtgtatg 34750059  T
Q  139 ccacctaaagtggttcatgtataagagctc 168  Q
    |||||||| |||||||||||||||||||||    
T  34750060 ccacctaaggtggttcatgtataagagctc 34750089  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 89; E-Value: 7e-43
Query Start/End: Original strand, 26 - 174
Target Start/End: Complemental strand, 21559703 - 21559555
Alignment:
Q  26 catgtgttaggaatattttagtaattttacatcatatcatcacctcttttcatctcttctttcaatgtttttgtcacatgtcacaaatgtgtgtggatgt 125  Q
    |||||||||||  ||||||||||||||||||||||||||| |||  |||||||||||||||||||| |||||| ||| |||||||||||||||||| |||    
T  21559703 catgtgttaggggtattttagtaattttacatcatatcattaccctttttcatctcttctttcaatatttttgccacgtgtcacaaatgtgtgtgggtgt 21559604  T
Q  126 aaaagaatgtatgccacctaaagtggttcatgtataagagctctattta 174  Q
    |||||  ||||||||||||||  ||||| ||||||||||||||| ||||    
T  21559603 aaaagggtgtatgccacctaagatggtttatgtataagagctcttttta 21559555  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 39 - 169
Target Start/End: Complemental strand, 36749535 - 36749405
Alignment:
Q  39 tattttagtaattttacatcatatcatcacctcttttcatctcttctttcaatgtttttgtcacatgtcacaaatgtgtgtggatgtaaaagaatgtatg 138  Q
    ||||| |||||||||||||||||||||||||  ||||||||||||||||||||||||||| ||| |||||||||||||||||| |||||||   ||||||    
T  36749535 tatttgagtaattttacatcatatcatcaccctttttcatctcttctttcaatgtttttgccacgtgtcacaaatgtgtgtgggtgtaaaaaggtgtatg 36749436  T
Q  139 ccacctaaagtggttcatgtataagagctct 169  Q
     || |||| ||||||||||||||||||||||    
T  36749435 acatctaaggtggttcatgtataagagctct 36749405  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 72 - 178
Target Start/End: Complemental strand, 29460756 - 29460650
Alignment:
Q  72 ttttcatctcttctttcaatgtttttgtcacatgtcacaaatgtgtgtggatgtaaaagaatgtatgccacctaaagtggttcatgtataagagctctat 171  Q
    ||||||||||||||||||||||||||| ||||||||||||| |||||||| ||||||||  |||||||||||||| ||||||||||||||||||||| ||    
T  29460756 ttttcatctcttctttcaatgtttttgccacatgtcacaaaagtgtgtgggtgtaaaagggtgtatgccacctaaggtggttcatgtataagagctcgat 29460657  T
Q  172 ttaatat 178  Q
    | |||||    
T  29460656 tgaatat 29460650  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 72 - 178
Target Start/End: Complemental strand, 29471608 - 29471502
Alignment:
Q  72 ttttcatctcttctttcaatgtttttgtcacatgtcacaaatgtgtgtggatgtaaaagaatgtatgccacctaaagtggttcatgtataagagctctat 171  Q
    ||||||||||||||||||||||||||| ||||||||||||| |||||||| ||||||||  |||||||||||||| ||||||||||||||||||||| ||    
T  29471608 ttttcatctcttctttcaatgtttttgccacatgtcacaaaagtgtgtgggtgtaaaagggtgtatgccacctaaggtggttcatgtataagagctcgat 29471509  T
Q  172 ttaatat 178  Q
    | |||||    
T  29471508 tgaatat 29471502  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 41 - 169
Target Start/End: Original strand, 30735560 - 30735687
Alignment:
Q  41 ttttagtaattttacatcatatcatcacctcttttcatctcttctttcaatgtttttgtcacatgtcacaaatgtgtgtggatgtaaaagaatgtatgcc 140  Q
    |||||||||||| |||||||||||||||| ||||| || ||||||||||||||||||| ||| ||||||| |||||||||| ||||||||  ||||||||    
T  30735560 ttttagtaatttaacatcatatcatcacc-ctttttatatcttctttcaatgtttttgccacgtgtcacagatgtgtgtgggtgtaaaagggtgtatgcc 30735658  T
Q  141 acctaaagtggttcatgtataagagctct 169  Q
    | |||| ||||||||| ||||||||||||    
T  30735659 atctaaggtggttcatatataagagctct 30735687  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 72 - 168
Target Start/End: Complemental strand, 38231389 - 38231293
Alignment:
Q  72 ttttcatctcttctttcaatgtttttgtcacatgtcacaaatgtgtgtggatgtaaaagaatgtatgccacctaaagtggttcatgtataagagctc 168  Q
    ||||||| ||||||||||||||||||| |||||||||||||||||||||| ||||||||  |||||||||||||| |||||||||||||||||||||    
T  38231389 ttttcatatcttctttcaatgtttttgccacatgtcacaaatgtgtgtgggtgtaaaagggtgtatgccacctaaggtggttcatgtataagagctc 38231293  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 19 - 170
Target Start/End: Original strand, 39467143 - 39467294
Alignment:
Q  19 tacacctcatgtgttaggaatattttagtaattttacatcatatcatcacctcttttcatctcttctttcaatgtttttgtcacatgtcacaaatgtgtg 118  Q
    |||||||||||||||| | ||||||||||||||| | |||| ||| ||||| ||||||||||||||||||||| |||||| |||||||||||||| ||||    
T  39467143 tacacctcatgtgttatggatattttagtaatttcatatcacatcctcaccccttttcatctcttctttcaatatttttggcacatgtcacaaatatgtg 39467242  T
Q  119 tggatgtaaaagaatgtatgccacctaaagtggttcatgtataagagctcta 170  Q
    ||| ||||||||  |||||| || |||  |||||| ||| |||| |||||||    
T  39467243 tgggtgtaaaagggtgtatgtcatctatggtggtttatggataacagctcta 39467294  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 37 - 169
Target Start/End: Complemental strand, 50966258 - 50966130
Alignment:
Q  37 aatattttagtaattttacatcatatcatcacctcttttcatctcttctttcaatgtttttgtcacatgtcacaaatgtgtgtggatgtaaaagaatgta 136  Q
    ||||||||||||||||||||| ||||||||  || |||||||||||||||||||| |||||||||| |||||||||||||  | ||||||||||  ||||    
T  50966258 aatattttagtaattttacattatatcatc--ct-ttttcatctcttctttcaatatttttgtcacgtgtcacaaatgtgaatagatgtaaaagggtgta 50966162  T
Q  137 tgccacctaaagtggttcatgtataagagctct 169  Q
    |||||||| |||  |||||||||||||||||||    
T  50966161 tgccacct-aagatgttcatgtataagagctct 50966130  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 37 - 169
Target Start/End: Complemental strand, 51069393 - 51069265
Alignment:
Q  37 aatattttagtaattttacatcatatcatcacctcttttcatctcttctttcaatgtttttgtcacatgtcacaaatgtgtgtggatgtaaaagaatgta 136  Q
    ||||||||||||||||||||| ||||||||  || |||||||||||||||||||| |||||||||| |||||||||||||  | ||||||||||  ||||    
T  51069393 aatattttagtaattttacattatatcatc--ct-ttttcatctcttctttcaatatttttgtcacgtgtcacaaatgtgaatagatgtaaaagggtgta 51069297  T
Q  137 tgccacctaaagtggttcatgtataagagctct 169  Q
    |||||||| |||  |||||||||||||||||||    
T  51069296 tgccacct-aagatgttcatgtataagagctct 51069265  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 42 - 160
Target Start/End: Original strand, 20856218 - 20856334
Alignment:
Q  42 tttagtaattttacatcatatcatcacctcttttcatctcttctttcaatgtttttgtcacatgtcacaaatgtgtgtggatgtaaaagaatgtatgcca 141  Q
    ||||||||||||| |||| ||||||| | ||||| || |||| |||||||||||||| |||||||||||||||||| ||| ||||||||  |||||||||    
T  20856218 tttagtaattttatatcacatcatcatc-ctttttatatctt-tttcaatgtttttgccacatgtcacaaatgtgtatgggtgtaaaagggtgtatgcca 20856315  T
Q  142 cctaaagtggttcatgtat 160  Q
    |||||||||||||||||||    
T  20856316 cctaaagtggttcatgtat 20856334  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 39 - 165
Target Start/End: Complemental strand, 48200814 - 48200688
Alignment:
Q  39 tattttagtaattttacatcatatcatcacctcttttcatctcttctttcaatgtttttgtcacatgtcacaaatgtgtgtggatgtaaaagaatgtatg 138  Q
    ||||| ||||||||||||||||||||||| |  |||||||||||||||||||| |||||| ||| |||||||||| | |||||||||||||   ||||||    
T  48200814 tatttgagtaattttacatcatatcatcatcctttttcatctcttctttcaatatttttgccacgtgtcacaaatatatgtggatgtaaaaaggtgtatg 48200715  T
Q  139 ccacctaaagtggttcatgtataagag 165  Q
    ||||||||  || |||||| |||||||    
T  48200714 ccacctaagatgattcatgaataagag 48200688  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 54 - 171
Target Start/End: Original strand, 39072350 - 39072467
Alignment:
Q  54 acatcatatcatcacctcttttcatctcttctttcaatgtttttgtcacatgtcacaaatgtgtgtggatgtaaaagaatgtatgccacctaaagtggtt 153  Q
    |||||| |||||||||  |||||||||||||||| ||||||| || |||||||||||||||| ||||| ||||||||  |||||| || |||| ||| ||    
T  39072350 acatcacatcatcacccattttcatctcttcttttaatgtttatgccacatgtcacaaatgtatgtgggtgtaaaagggtgtatgtcatctaaggtgatt 39072449  T
Q  154 catgtataagagctctat 171  Q
    ||||||||| ||||||||    
T  39072450 catgtataatagctctat 39072467  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 39 - 147
Target Start/End: Complemental strand, 53638264 - 53638156
Alignment:
Q  39 tattttagtaattttacatcatatcatcacctcttttcatctcttctttcaatgtttttgtcacatgtcacaaatgtgtgtggatgtaaaagaatgtatg 138  Q
    |||||||| |||||||||||| ||||||||| | | |||||||||||||| ||||||||  |||||||||| | ||||||||| ||| ||||  ||||||    
T  53638264 tattttagcaattttacatcacatcatcaccccctctcatctcttctttccatgtttttaccacatgtcacgattgtgtgtgggtgttaaagggtgtatg 53638165  T
Q  139 ccacctaaa 147  Q
    |||||||||    
T  53638164 ccacctaaa 53638156  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 20 - 76
Target Start/End: Complemental strand, 29472957 - 29472901
Alignment:
Q  20 acacctcatgtgttaggaatattttagtaattttacatcatatcatcacctcttttc 76  Q
    ||||| |||||||||||  ||||||||||||||||||||||||||||| | ||||||    
T  29472957 acaccccatgtgttaggggtattttagtaattttacatcatatcatcatcccttttc 29472901  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 75 - 161
Target Start/End: Original strand, 29820397 - 29820483
Alignment:
Q  75 tcatctcttctttcaatgtttttgtcacatgtcacaaatgtgtgtggatgtaaaagaatgtatgccacctaaagtggttcatgtata 161  Q
    ||||||||||||| ||||||||||  |||| |||||| ||| ||||| ||| ||||  |||||||||||||| |||||  |||||||    
T  29820397 tcatctcttcttttaatgtttttgctacatctcacaattgtatgtgggtgtcaaagtgtgtatgccacctaaggtggtctatgtata 29820483  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 78 - 162
Target Start/End: Original strand, 5417684 - 5417768
Alignment:
Q  78 tctcttctttcaatgtttttgtcacatgtcacaaatgtgtgtggatgtaaaagaatgtatgccacctaaagtggttcatgtataa 162  Q
    |||||||||| ||| |||||| ||||||| | || ||| ||||  ||| ||||  |||||||||||||||||||| ||| |||||    
T  5417684 tctcttcttttaatatttttgccacatgttataattgtatgtgagtgtcaaagtgtgtatgccacctaaagtggtccatatataa 5417768  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 91 - 163
Target Start/End: Original strand, 11008422 - 11008494
Alignment:
Q  91 tgtttttgtcacatgtcacaaatgtgtgtggatgtaaaagaatgtatgccacctaaagtggttcatgtataag 163  Q
    |||||||| |||||||||||| || ||| |   || |||| ||||| ||||||||||||||| ||||||||||    
T  11008422 tgtttttgccacatgtcacaattgcgtgcgagagtcaaaggatgtacgccacctaaagtggtccatgtataag 11008494  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 99; Significance: 7e-49; HSPs: 10)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 99; E-Value: 7e-49
Query Start/End: Original strand, 26 - 168
Target Start/End: Original strand, 34307187 - 34307329
Alignment:
Q  26 catgtgttaggaatattttagtaattttacatcatatcatcacctcttttcatctcttctttcaatgtttttgtcacatgtcacaaatgtgtgtggatgt 125  Q
    |||||||||||  |||||||||||||||||||||||||||||||  ||||||| ||||||||||||||||||| ||| ||||||||||||||||||||||    
T  34307187 catgtgttaggggtattttagtaattttacatcatatcatcaccctttttcatatcttctttcaatgtttttgccacgtgtcacaaatgtgtgtggatgt 34307286  T
Q  126 aaaagaatgtatgccacctaaagtggttcatgtataagagctc 168  Q
    |||||  |||||||||||||| |||||| ||||||||||||||    
T  34307287 aaaagggtgtatgccacctaaggtggtttatgtataagagctc 34307329  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 98; E-Value: 3e-48
Query Start/End: Original strand, 23 - 164
Target Start/End: Complemental strand, 2509169 - 2509028
Alignment:
Q  23 cctcatgtgttaggaatattttagtaattttacatcatatcatcacctcttttcatctcttctttcaatgtttttgtcacatgtcacaaatgtgtgtgga 122  Q
    |||||||| ||||| ||||||||||||||||||||||||||| ||||  ||||||||||||||||||||||||||| ||| ||||||||||||||||||     
T  2509169 cctcatgtattagggatattttagtaattttacatcatatcaccaccctttttcatctcttctttcaatgtttttgccacgtgtcacaaatgtgtgtggg 2509070  T
Q  123 tgtaaaagaatgtatgccacctaaagtggttcatgtataaga 164  Q
    |||||||| ||||||| ||||||| |||||||||||||||||    
T  2509069 tgtaaaaggatgtatgtcacctaaggtggttcatgtataaga 2509028  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 84; E-Value: 7e-40
Query Start/End: Original strand, 26 - 173
Target Start/End: Original strand, 39249912 - 39250059
Alignment:
Q  26 catgtgttaggaatattttagtaattttacatcatatcatcacctcttttcatctcttctttcaatgtttttgtcacatgtcacaaatgtgtgtggatgt 125  Q
    ||||| |||||  ||||||||||||||||||| |||||| || |  ||||||||||||||||||||||||||| ||| |||||||||||||| ||| |||    
T  39249912 catgtattaggggtattttagtaattttacattatatcaccatcctttttcatctcttctttcaatgtttttgccacgtgtcacaaatgtgtatgggtgt 39250011  T
Q  126 aaaagaatgtatgccacctaaagtggttcatgtataagagctctattt 173  Q
    |||||  ||||||||||||||  |||||||||||||||||||||||||    
T  39250012 aaaagggtgtatgccacctaagatggttcatgtataagagctctattt 39250059  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 19 - 169
Target Start/End: Original strand, 19258714 - 19258864
Alignment:
Q  19 tacacctcatgtgttaggaatattttagtaattttacatcatatcatcacctcttttcatctcttctttcaatgtttttgtcacatgtcacaaatgtgtg 118  Q
    |||||| |||||||||||||||||||| |||||| |||||| |||| |||| ||||||||||||| |||||||||||||| |||||||||||||| | ||    
T  19258714 tacaccccatgtgttaggaatattttaataatttcacatcacatcaccaccccttttcatctcttttttcaatgtttttgccacatgtcacaaatatatg 19258813  T
Q  119 tggatgtaaaagaatgtatgccacctaaagtggttcatgtataagagctct 169  Q
    ||| |||||||   |||||||||||| |  ||||| |||||||| ||||||    
T  19258814 tgggtgtaaaaaggtgtatgccaccttagatggtttatgtataatagctct 19258864  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 26 - 168
Target Start/End: Complemental strand, 28647495 - 28647353
Alignment:
Q  26 catgtgttaggaatattttagtaattttacatcatatcatcacctcttttcatctcttctttcaatgtttttgtcacatgtcacaaatgtgtgtggatgt 125  Q
    |||||||||||||||||||| |||||| |||||| |||| |||| |||||||||| ||||||||||||||||| || || |||||||| ||||||| |||    
T  28647495 catgtgttaggaatattttaataatttcacatcacatcaccaccccttttcatctattctttcaatgtttttgccaaatatcacaaatatgtgtgggtgt 28647396  T
Q  126 aaaagaatgtatgccacctaaagtggttcatgtataagagctc 168  Q
    ||||  |||||||| |||| | ||||||||||||||| |||||    
T  28647395 aaaaagatgtatgcaaccttaggtggttcatgtataatagctc 28647353  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 34 - 168
Target Start/End: Original strand, 46901792 - 46901926
Alignment:
Q  34 aggaatattttagtaattttacatcatatcatcacctcttttcatctcttctttcaatgtttttgtcacatgtcacaaatgtgtgtggatgtaaaagaat 133  Q
    |||| ||||| |||||||||||||||||||||||||  |||||||||||||||| |||||||||| ||| |||||||||| ||||| | |||||||   |    
T  46901792 aggagtatttgagtaattttacatcatatcatcaccctttttcatctcttcttttaatgtttttgccacgtgtcacaaatatgtgttggtgtaaaatggt 46901891  T
Q  134 gtatgccacctaaagtggttcatgtataagagctc 168  Q
    ||||| ||||||| |||||||||||||||||||||    
T  46901892 gtatgtcacctaaggtggttcatgtataagagctc 46901926  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 45 - 164
Target Start/End: Complemental strand, 29099939 - 29099821
Alignment:
Q  45 agtaattttacatcatatcatcacctcttttcatctcttctttcaatgtttttgtcacatgtcacaaatgtgtgtggatgtaaaagaatgtatgccacct 144  Q
    |||||||| |||||| ||||||||| ||||| || |||| |||||||||||||||||||||||||||||||||||||| || ||||| ||||||||| ||    
T  29099939 agtaatttcacatcacatcatcaccccttttaatttcttttttcaatgtttttgtcacatgtcacaaatgtgtgtggacgt-aaagagtgtatgccatct 29099841  T
Q  145 aaagtggttcatgtataaga 164  Q
    || |||||| ||||||||||    
T  29099840 aaggtggtttatgtataaga 29099821  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 20 - 121
Target Start/End: Original strand, 9642909 - 9643010
Alignment:
Q  20 acacctcatgtgttaggaatattttagtaattttacatcatatcatcacctcttt-tcatctcttctttcaatgtttttgtcacatgtcacaaatgtgtg 118  Q
    |||| |||||||| ||| || |||||||||||| |||||||||||||||| | || ||||||||||||||| |||||||||||  |||||||| | ||||    
T  9642909 acacttcatgtgt-agggatgttttagtaatttcacatcatatcatcacccccttctcatctcttctttcattgtttttgtcatgtgtcacaattatgtg 9643007  T
Q  119 tgg 121  Q
    |||    
T  9643008 tgg 9643010  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 85 - 163
Target Start/End: Complemental strand, 10147049 - 10146971
Alignment:
Q  85 tttcaatgtttttgtcacatgtcacaaatgtgtgtggatgtaaaagaatgtatgccacctaaagtggttcatgtataag 163  Q
    ||||| |||||||| |||||||||||| |||||||||  || ||||  |||||||||||||| ||||| ||||||||||    
T  10147049 tttcactgtttttgccacatgtcacaattgtgtgtgggggtcaaagggtgtatgccacctaaggtggtccatgtataag 10146971  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 76 - 111
Target Start/End: Original strand, 8848952 - 8848987
Alignment:
Q  76 catctcttctttcaatgtttttgtcacatgtcacaa 111  Q
    |||||||| |||||||||||||||||||||||||||    
T  8848952 catctcttatttcaatgtttttgtcacatgtcacaa 8848987  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0062 (Bit Score: 98; Significance: 3e-48; HSPs: 1)
Name: scaffold0062
Description:

Target: scaffold0062; HSP #1
Raw Score: 98; E-Value: 3e-48
Query Start/End: Original strand, 23 - 164
Target Start/End: Complemental strand, 6863 - 6722
Alignment:
Q  23 cctcatgtgttaggaatattttagtaattttacatcatatcatcacctcttttcatctcttctttcaatgtttttgtcacatgtcacaaatgtgtgtgga 122  Q
    |||||||| ||||| |||||| |||||||||||||||||||||||||  ||||||||||||||||||||||||||| ||| ||||||||||||||||||     
T  6863 cctcatgtattagggatatttaagtaattttacatcatatcatcaccctttttcatctcttctttcaatgtttttgccacgtgtcacaaatgtgtgtggg 6764  T
Q  123 tgtaaaagaatgtatgccacctaaagtggttcatgtataaga 164  Q
    ||||||||  |||||||||||||| |||||||||||||||||    
T  6763 tgtaaaagggtgtatgccacctaaggtggttcatgtataaga 6722  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 94; Significance: 7e-46; HSPs: 6)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 94; E-Value: 7e-46
Query Start/End: Original strand, 19 - 168
Target Start/End: Complemental strand, 14023083 - 14022934
Alignment:
Q  19 tacacctcatgtgttaggaatattttagtaattttacatcatatcatcacctcttttcatctcttctttcaatgtttttgtcacatgtcacaaatgtgtg 118  Q
    ||||||||||||||||||  |||||||||||||| |||||| ||| ||||| ||| |||||||||||||||||||||||| |||||||||||||||||||    
T  14023083 tacacctcatgtgttaggggtattttagtaatttcacatcacatcgtcaccccttgtcatctcttctttcaatgtttttgccacatgtcacaaatgtgtg 14022984  T
Q  119 tggatgtaaaagaatgtatgccacctaaagtggttcatgtataagagctc 168  Q
    ||| ||||||||  |||||||||||||| |||||| |||||||| |||||    
T  14022983 tgggtgtaaaagggtgtatgccacctaaggtggtttatgtataatagctc 14022934  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 91; E-Value: 4e-44
Query Start/End: Original strand, 39 - 169
Target Start/End: Original strand, 3986967 - 3987097
Alignment:
Q  39 tattttagtaattttacatcatatcatcacctcttttcatctcttctttcaatgtttttgtcacatgtcacaaatgtgtgtggatgtaaaagaatgtatg 138  Q
    ||||| |||||||||||||||||| |||| | |||||||||||||||||||||||||||| ||| |||||||||||||||||| ||||||||  ||||||    
T  3986967 tatttgagtaattttacatcatattatcatcccttttcatctcttctttcaatgtttttgccacgtgtcacaaatgtgtgtgggtgtaaaagggtgtatg 3987066  T
Q  139 ccacctaaagtggttcatgtataagagctct 169  Q
    |||||||| ||||||||||||||||||||||    
T  3987067 ccacctaaggtggttcatgtataagagctct 3987097  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 19 - 168
Target Start/End: Complemental strand, 24208593 - 24208444
Alignment:
Q  19 tacacctcatgtgttaggaatattttagtaattttacatcatatcatcacctcttttcatctcttctttcaatgtttttgtcacatgtcacaaatgtgtg 118  Q
    ||||||||||||||||||  |||||||||||||| |||||| ||| |||||  ||||||||||||||||||||||||||| ||||| |||||||||||||    
T  24208593 tacacctcatgtgttaggggtattttagtaatttcacatcacatcctcaccctttttcatctcttctttcaatgtttttgccacatatcacaaatgtgtg 24208494  T
Q  119 tggatgtaaaagaatgtatgccacctaaagtggttcatgtataagagctc 168  Q
    ||| ||||||| | ||||| |||||||   ||||| |||||||| |||||    
T  24208493 tgggtgtaaaatagtgtataccacctatgatggtttatgtataacagctc 24208444  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 76; E-Value: 4e-35
Query Start/End: Original strand, 26 - 169
Target Start/End: Original strand, 3118096 - 3118239
Alignment:
Q  26 catgtgttaggaatattttagtaattttacatcatatcatcacctcttttcatctcttctttcaatgtttttgtcacatgtcacaaatgtgtgtggatgt 125  Q
    ||||| |||||  |||||||||||||||||||||| ||| ||||  |||| |||| ||||||||||||||||| ||| |||||||||||||||||  |||    
T  3118096 catgtattaggggtattttagtaattttacatcatgtcaccacccttttttatctattctttcaatgtttttgccacgtgtcacaaatgtgtgtgagtgt 3118195  T
Q  126 aaaagaatgtatgccacctaaagtggttcatgtataagagctct 169  Q
    |||||  |||||||||||||| ||||||||| ||||||||||||    
T  3118196 aaaagggtgtatgccacctaaggtggttcatatataagagctct 3118239  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 67; E-Value: 9e-30
Query Start/End: Original strand, 40 - 169
Target Start/End: Original strand, 15345722 - 15345849
Alignment:
Q  40 attttagtaattttacatcatatcatcacctcttttcatctcttctttcaatgtttttgtcacatgtcacaaatgtgtgtggatgtaaaagaatgtatgc 139  Q
    |||| |||||||| | ||||||||||||||| ||||||||| ||||||||||||||||| ||| |||||||||  ||| ||| ||||||||| | |||||    
T  15345722 atttgagtaatttgatatcatatcatcaccttttttcatcttttctttcaatgtttttgccacgtgtcacaaa--tgtatgggtgtaaaagagtatatgc 15345819  T
Q  140 cacctaaagtggttcatgtataagagctct 169  Q
    ||||||| |||||| |||||||||||||||    
T  15345820 cacctaaggtggttgatgtataagagctct 15345849  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 19 - 168
Target Start/End: Complemental strand, 13697717 - 13697569
Alignment:
Q  19 tacacctcatgtgttaggaatattttagtaattttacatcatatcatcacctcttttcatctcttctttcaatgtttttgtcacatgtcacaaatgtgtg 118  Q
    |||||| ||||||||||  ||||||||||||||||| ||||||||||||||  ||||||||||||||||||||||||||  ||| | ||||||||||||     
T  13697717 tacaccccatgtgttagagatattttagtaattttatatcatatcatcacccgttttcatctcttctttcaatgtttttaccacgtatcacaaatgtgta 13697618  T
Q  119 tggatgtaaaagaatgtatgccacctaaagtggttcatgtataagagctc 168  Q
    ||| ||||||||  || ||| || ||||  ||||| ||||||||||||||    
T  13697617 tgg-tgtaaaagggtgcatgtcatctaagatggtttatgtataagagctc 13697569  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0043 (Bit Score: 73; Significance: 2e-33; HSPs: 1)
Name: scaffold0043
Description:

Target: scaffold0043; HSP #1
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 19 - 164
Target Start/End: Original strand, 87204 - 87350
Alignment:
Q  19 tacacctcatgtgttaggaatattttagtaattttacatcatat--catcacctcttttcatctcttctttcaatgtttttgtcacatgtcacaaatgtg 116  Q
    |||||| |||||||||||  |||||||||||||||| || ||||  ||||||   ||||||||||||||||||||||||||| ||| |||||||||||||    
T  87204 tacaccccatgtgttaggggtattttagtaattttatattatatatcatcactatttttcatctcttctttcaatgtttttgccacgtgtcacaaatgtg 87303  T
Q  117 tgtggatgtaaaagaatgtatgccacctaaagtggttcatgtataaga 164  Q
    ||||| |||| |||  |||||||||||||| |||||||||||||||||    
T  87304 tgtgg-tgtacaagggtgtatgccacctaaggtggttcatgtataaga 87350  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University