View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17847_high_10 (Length: 286)
Name: NF17847_high_10
Description: NF17847
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17847_high_10 |
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Alignment Details
Target: chr4 (Bit Score: 232; Significance: 1e-128; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 232; E-Value: 1e-128
Query Start/End: Original strand, 1 - 271
Target Start/End: Original strand, 55575104 - 55575377
Alignment:
| Q |
1 |
tctggttaaattcaactacttctattttctcaaattaccagtgtcggtgtgtcagtgtttcataaaaatgaggcatcaaaacatcttgtaatctacatat |
100 |
Q |
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|||||||| |||||| |||||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
55575104 |
tctggttacattcaattacttctattttctcaaattactagtgtcggtgtgtcggtgtttcataaaaatgaggcatcaaaacatcttgtaatctacatat |
55575203 |
T |
|
| Q |
101 |
aacttg---taatctacatgaaatttgaatctcccaaacttacaaaccttgatgtcactgattgaacagaatgaaagacctccactgcctgcaagttgtc |
197 |
Q |
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|||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
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| T |
55575204 |
aacttggaataattgacatgaaatttgaatctcccaaacttacaaaccttgatgtcactgattgaacagaatgaaaggcctccactgcctgcaagttgtc |
55575303 |
T |
|
| Q |
198 |
agccagcacttgcacacctaataaagcgttgttggtcagcaaatccttcaaagaggccagatttcagttatatt |
271 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
55575304 |
agccagcacttgcacacctaataaagcgttgttggtcagcaaatccttcaaagaggccagatttcagttatatt |
55575377 |
T |
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