View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF17847_high_11 (Length: 285)
Name: NF17847_high_11
Description: NF17847
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17847_high_11 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 188; Significance: 1e-102; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 188; E-Value: 1e-102
Query Start/End: Original strand, 1 - 200
Target Start/End: Original strand, 35394056 - 35394255
Alignment:
| Q |
1 |
tgcagaagagagagttgtggcggttatcatggttggaggacccaccaaaggcactcgattccgtccattatcattcaacattcctaaaccactctttcca |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
35394056 |
tgcagaagagagagttgtggcggttatcatggttggaggacccaccaaaggcactcgattccgtccattatcattcaacattcctaaaccactctttcca |
35394155 |
T |
|
| Q |
101 |
ttagctggacaacctatggttcatcatccaatctctgcttgtcaaaaagtattctcactcattcactctcacatttcatattcatatctttaatcttctg |
200 |
Q |
| |
|
|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |||||||||| |
|
|
| T |
35394156 |
ttagctggacaaccaatggttcatcatccaatctctgcttgtcaaaaagtattctcactcgttcactctcacatttcatattcatatctataatcttctg |
35394255 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University