View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17847_high_14 (Length: 269)
Name: NF17847_high_14
Description: NF17847
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17847_high_14 |
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Alignment Details
Target: chr5 (Bit Score: 246; Significance: 1e-136; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 246; E-Value: 1e-136
Query Start/End: Original strand, 1 - 257
Target Start/End: Original strand, 12320082 - 12320339
Alignment:
| Q |
1 |
agctatccacctatctaaataacaatttaatatttctggaaattctgtcatggattctttaaatgtgccgtgagccttccaataagagaagcaccaaaat |
100 |
Q |
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| T |
12320082 |
agctatccacctatctaaataacaatttaatatttctggaaattctgtcatggattctttaaatgtgccgtgagccttccaataagagaagcaccaaaat |
12320181 |
T |
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| Q |
101 |
accactctcatcttttatcctacaaatgttaattcaattgggttatacctcttcc-aagaacaaagccaagtgacacatgtttaagagtaaaaaggtaaa |
199 |
Q |
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| T |
12320182 |
accactctcatcttttatcctacaaatgttaattcaattgggttatacctcttccaaagaacaaagccaagtgacacatgtttaagagtaaaaaggtaaa |
12320281 |
T |
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| Q |
200 |
accagcacggttggtgcatatatgctggtgttgcgtttgctttatgtttacacaggtt |
257 |
Q |
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| T |
12320282 |
accagcacggttggtgcatatatgctggtgtcgcgtttgctttatgtttacacaggtt |
12320339 |
T |
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Target: chr2 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 34 - 132
Target Start/End: Original strand, 6919683 - 6919780
Alignment:
| Q |
34 |
ttctggaaattctgtcatggattctttaaatgtgccgtgagccttccaataagagaagcaccaaaataccactctcatcttttatcctacaaatgttaa |
132 |
Q |
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| T |
6919683 |
ttctggaaactctatcatgcattcattaac-gtgccatgagccttccaataaaggaagcaccaaaatactaagttcatcttttattctacgaatgttaa |
6919780 |
T |
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