View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17847_high_3 (Length: 524)
Name: NF17847_high_3
Description: NF17847
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17847_high_3 |
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Alignment Details
Target: chr5 (Bit Score: 458; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 458; E-Value: 0
Query Start/End: Original strand, 19 - 512
Target Start/End: Original strand, 12319593 - 12320086
Alignment:
| Q |
19 |
acaaagcacaactcgttaacattattttacaagagaaagaaactaaatgtaaaggcatcattaaaattcttataattgatgtccaaataattgacatctt |
118 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
12319593 |
acaaagcacaactcgttaacattattttacaagagaaagaaactaaatgtaaaggcatcattaaaattcttataattgatgtccaaataattgacatctt |
12319692 |
T |
|
| Q |
119 |
gtttacttgttagcatatacttgtattgtgtttgcttccagtgtttacacaggacaaacaacaaagtggcgctctttaaagtgtcgaagttaaataacaa |
218 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
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| T |
12319693 |
gtttacttgttagcatatacttgtattgtgtttgcttccagtgtttacacaggacaaacaacaaagtggcgatctttaaagtgtcgaagttaaataacaa |
12319792 |
T |
|
| Q |
219 |
tttgagtcggacacggcccatggactctaactttgaatcggaaagattaaatcctacaattctgagtccggggacaaattcagtccgtcaaagaccttga |
318 |
Q |
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|||||||||||||||||||| ||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
12319793 |
tttgagtcggacacggcccagggactctaactttgagtcggacagattaaatcctacaattctgagtccggggacaaattcagtccgtcaaagacattga |
12319892 |
T |
|
| Q |
319 |
gcccgataaagaccaccatcccagtgaaggtatcaactgtgtttgtgcgcggaacaattacgaggctcgtgagcgtggaacattataacaatacccgttt |
418 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |||||||||||||||||||||||| |
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| T |
12319893 |
gcccgataaagaccaccatcccagtgaaggtatcaactgtgtttgtgcgtggaacaattacgaggctcgtgagcgcggaacattataacaatacccgttt |
12319992 |
T |
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| Q |
419 |
acaacaaagttgagcatggccgaagtaagacaataacaatccgcatgtcttcgccatgaagataaacaggttcaatcattcttctcctttgcta |
512 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||| |
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| T |
12319993 |
acaacaaagttgagcatggccgaagtaagacaataacaatccgcatgtctccgccatgaagataaacaggttcaatcattcttctccttagcta |
12320086 |
T |
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