View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17847_high_4 (Length: 483)

Name: NF17847_high_4
Description: NF17847
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17847_high_4
NF17847_high_4
[»] chr1 (6 HSPs)
chr1 (91-463)||(38821898-38822268)
chr1 (364-407)||(29070690-29070733)
chr1 (365-407)||(21909866-21909908)
chr1 (351-405)||(27732197-27732251)
chr1 (351-401)||(27732265-27732315)
chr1 (360-405)||(29070637-29070682)
[»] chr5 (9 HSPs)
chr5 (347-405)||(27385543-27385601)
chr5 (354-407)||(24089056-24089109)
chr5 (372-404)||(14144359-14144391)
chr5 (365-407)||(24433560-24433602)
chr5 (372-405)||(1023725-1023758)
chr5 (366-407)||(23042035-23042076)
chr5 (352-405)||(27385480-27385533)
chr5 (369-405)||(694281-694317)
chr5 (372-404)||(15479950-15479982)
[»] scaffold0072 (1 HSPs)
scaffold0072 (351-403)||(3841-3893)
[»] chr3 (7 HSPs)
chr3 (333-407)||(24599952-24600025)
chr3 (354-405)||(18409295-18409346)
chr3 (360-405)||(36458650-36458695)
chr3 (372-405)||(39682641-39682674)
chr3 (360-405)||(45502737-45502782)
chr3 (360-405)||(45502786-45502831)
chr3 (360-405)||(53739463-53739508)
[»] chr4 (7 HSPs)
chr4 (372-404)||(34176984-34177016)
chr4 (333-397)||(38785764-38785828)
chr4 (351-401)||(46462459-46462509)
chr4 (347-404)||(46462387-46462444)
chr4 (369-405)||(20215596-20215632)
chr4 (372-404)||(21790181-21790213)
chr4 (342-402)||(23599782-23599841)
[»] chr8 (4 HSPs)
chr8 (372-407)||(7410638-7410673)
chr8 (351-404)||(6402064-6402117)
chr8 (366-407)||(26492382-26492423)
chr8 (360-404)||(34540741-34540785)
[»] chr7 (3 HSPs)
chr7 (366-404)||(24934577-24934615)
chr7 (372-405)||(27163197-27163230)
chr7 (347-404)||(30486660-30486717)
[»] chr2 (3 HSPs)
chr2 (365-407)||(32070534-32070576)
chr2 (372-405)||(44587675-44587708)
chr2 (369-405)||(23738393-23738429)
[»] scaffold1266 (1 HSPs)
scaffold1266 (356-405)||(205-254)
[»] scaffold0263 (1 HSPs)
scaffold0263 (356-405)||(19809-19858)
[»] chr6 (1 HSPs)
chr6 (335-407)||(1858350-1858421)


Alignment Details
Target: chr1 (Bit Score: 281; Significance: 1e-157; HSPs: 6)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 281; E-Value: 1e-157
Query Start/End: Original strand, 91 - 463
Target Start/End: Original strand, 38821898 - 38822268
Alignment:
Q  91 gatggcaacaatagaaaaatattgtgtctgacatctttttggatattaaagtaannnnnnnnnaccatggtttgaagttccaccgccgattagggtgact 190  Q
    ||||||||||||||||||||||||||||| ||||||||||||||||||||||||         |||||||||||||||||||||||||||||||||||||    
T  38821898 gatggcaacaatagaaaaatattgtgtctaacatctttttggatattaaagtaatttctttt-accatggtttgaagttccaccgccgattagggtgact 38821996  T
Q  191 aatatccatcgacaaatctattgggcatacaaaatgcgttctctcatctcaaccaaattttcttcatgcgcgaaaatgtatgagatcaaatccttgataa 290  Q
    ||| |||||||| |||||||||||||| ||||| ||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||| ||||||||    
T  38821997 aatctccatcgagaaatctattgggcacacaaagtgcgttctctcatctcaaccaaattttcttcgtgcacgaaaatgtatgagatcaaatacttgataa 38822096  T
Q  291 catgtttaacaagttccaatcttgtaccacatttattaatctattactcccaccattcttaattataaccaactttttacattttaggtttattgaataa 390  Q
    | |||||||||||||||||||| ||||||||| |||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||    
T  38822097 cctgtttaacaagttccaatctcgtaccacatatattaatctattactcccaccattcttaattataacaaactttttatattttaggtttattgaataa 38822196  T
Q  391 atgatgtatgtggtccaccacatctatcatttattaaatgaaaatgatcacatgatcactcaaaagacttaca 463  Q
    ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  38822197 atgatgt-tgtggtccaccacatctatcatttattaaatgaaaatgatcacatgatcactcaaaagacttaca 38822268  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 364 - 407
Target Start/End: Complemental strand, 29070733 - 29070690
Alignment:
Q  364 tttttacattttaggtttattgaataaatgatgtatgtggtcca 407  Q
    |||| |||||||||||| ||| ||||||||||||||||||||||    
T  29070733 ttttcacattttaggttcattcaataaatgatgtatgtggtcca 29070690  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 365 - 407
Target Start/End: Original strand, 21909866 - 21909908
Alignment:
Q  365 ttttacattttaggtttattgaataaatgatgtatgtggtcca 407  Q
    |||||| ||||||||||||| ||| ||||||||||||||||||    
T  21909866 ttttactttttaggtttattcaattaatgatgtatgtggtcca 21909908  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 351 - 405
Target Start/End: Original strand, 27732197 - 27732251
Alignment:
Q  351 aattataaccaactttttacattttaggtttattgaataaatgatgtatgtggtc 405  Q
    |||||||  |||||||| || ||||||||| ||||||||||||||||||| ||||    
T  27732197 aattataggcaacttttcactttttaggttcattgaataaatgatgtatgcggtc 27732251  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 351 - 401
Target Start/End: Complemental strand, 27732315 - 27732265
Alignment:
Q  351 aattataaccaactttttacattttaggtttattgaataaatgatgtatgt 401  Q
    |||||||| |||||||| || ||||||||| ||||||||||||||| ||||    
T  27732315 aattataagcaacttttcactttttaggttcattgaataaatgatgcatgt 27732265  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 360 - 405
Target Start/End: Original strand, 29070637 - 29070682
Alignment:
Q  360 caactttttacattttaggtttattgaataaatgatgtatgtggtc 405  Q
    ||||||||||| ||||| ||| ||| ||||||||||||||||||||    
T  29070637 caactttttactttttatgttcattcaataaatgatgtatgtggtc 29070682  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 43; Significance: 0.000000000000003; HSPs: 9)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 347 - 405
Target Start/End: Complemental strand, 27385601 - 27385543
Alignment:
Q  347 tcttaattataaccaactttttacattttaggtttattgaataaatgatgtatgtggtc 405  Q
    |||||||||||| |||||||| || ||||||||| ||||||||||||||||||||||||    
T  27385601 tcttaattataagcaacttttcaccttttaggttcattgaataaatgatgtatgtggtc 27385543  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 354 - 407
Target Start/End: Original strand, 24089056 - 24089109
Alignment:
Q  354 tataaccaactttttacattttaggtttattgaataaatgatgtatgtggtcca 407  Q
    ||||| ||||||||||| ||||||||| ||| ||||||||||||||||||||||    
T  24089056 tataaacaactttttactttttaggttcattcaataaatgatgtatgtggtcca 24089109  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 372 - 404
Target Start/End: Original strand, 14144359 - 14144391
Alignment:
Q  372 ttttaggtttattgaataaatgatgtatgtggt 404  Q
    |||||||||||||||||||||||||||||||||    
T  14144359 ttttaggtttattgaataaatgatgtatgtggt 14144391  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 365 - 407
Target Start/End: Original strand, 24433560 - 24433602
Alignment:
Q  365 ttttacattttaggtttattgaataaatgatgtatgtggtcca 407  Q
    |||||| |||||| |||||||||| ||||||||||||||||||    
T  24433560 ttttactttttagatttattgaattaatgatgtatgtggtcca 24433602  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 372 - 405
Target Start/End: Complemental strand, 1023758 - 1023725
Alignment:
Q  372 ttttaggtttattgaataaatgatgtatgtggtc 405  Q
    ||||||||| ||||||||||||||||||||||||    
T  1023758 ttttaggttcattgaataaatgatgtatgtggtc 1023725  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 366 - 407
Target Start/End: Complemental strand, 23042076 - 23042035
Alignment:
Q  366 tttacattttaggtttattgaataaatgatgtatgtggtcca 407  Q
    ||||| ||||||||| ||||||| ||||||||||||||||||    
T  23042076 tttactttttaggttcattgaattaatgatgtatgtggtcca 23042035  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 352 - 405
Target Start/End: Original strand, 27385480 - 27385533
Alignment:
Q  352 attataaccaactttttacattttaggtttattgaataaatgatgtatgtggtc 405  Q
    ||||||| |||||||| || ||||||  | ||||||||||||||||||||||||    
T  27385480 attataagcaacttttcactttttagactcattgaataaatgatgtatgtggtc 27385533  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 369 - 405
Target Start/End: Complemental strand, 694317 - 694281
Alignment:
Q  369 acattttaggtttattgaataaatgatgtatgtggtc 405  Q
    |||||||||||||||| ||||||| ||||||||||||    
T  694317 acattttaggtttatttaataaattatgtatgtggtc 694281  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 372 - 404
Target Start/End: Original strand, 15479950 - 15479982
Alignment:
Q  372 ttttaggtttattgaataaatgatgtatgtggt 404  Q
    ||||||||||||||||||||||||| |||||||    
T  15479950 ttttaggtttattgaataaatgatgaatgtggt 15479982  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0072 (Bit Score: 37; Significance: 0.00000000001; HSPs: 1)
Name: scaffold0072
Description:

Target: scaffold0072; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 351 - 403
Target Start/End: Original strand, 3841 - 3893
Alignment:
Q  351 aattataaccaactttttacattttaggtttattgaataaatgatgtatgtgg 403  Q
    ||||| || ||||||||||| |||||||||||||||||||||||||| |||||    
T  3841 aattacaagcaactttttactttttaggtttattgaataaatgatgtgtgtgg 3893  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 35; Significance: 0.0000000002; HSPs: 7)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 333 - 407
Target Start/End: Complemental strand, 24600025 - 24599952
Alignment:
Q  333 attactcccaccattcttaattataaccaactttttacattttaggtttattgaataaatgatgtatgtggtcca 407  Q
    ||||||||| || ||||||| ||||| ||| |||| || ||||||||||||| ||| ||||||||||||||||||    
T  24600025 attactccctccgttcttaaatataagcaaatttt-actttttaggtttattcaattaatgatgtatgtggtcca 24599952  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 354 - 405
Target Start/End: Complemental strand, 18409346 - 18409295
Alignment:
Q  354 tataaccaactttttacattttaggtttattgaataaatgatgtatgtggtc 405  Q
    ||||| |||||||| | |||||||||| ||| ||||||||||||||||||||    
T  18409346 tataaacaacttttcatattttaggttcattcaataaatgatgtatgtggtc 18409295  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 360 - 405
Target Start/End: Original strand, 36458650 - 36458695
Alignment:
Q  360 caactttttacattttaggtttattgaataaatgatgtatgtggtc 405  Q
    ||||||||||| ||||||||| ||| |||||| |||||||||||||    
T  36458650 caactttttactttttaggttcattcaataaaagatgtatgtggtc 36458695  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 372 - 405
Target Start/End: Original strand, 39682641 - 39682674
Alignment:
Q  372 ttttaggtttattgaataaatgatgtatgtggtc 405  Q
    ||||||||| ||||||||||||||||||||||||    
T  39682641 ttttaggttcattgaataaatgatgtatgtggtc 39682674  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 360 - 405
Target Start/End: Original strand, 45502737 - 45502782
Alignment:
Q  360 caactttttacattttaggtttattgaataaatgatgtatgtggtc 405  Q
    ||||||||||  ||||||||| ||| ||||||||||||||||||||    
T  45502737 caactttttattttttaggttcattcaataaatgatgtatgtggtc 45502782  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 360 - 405
Target Start/End: Complemental strand, 45502831 - 45502786
Alignment:
Q  360 caactttttacattttaggtttattgaataaatgatgtatgtggtc 405  Q
    ||||||||||  ||||||||| ||| ||||||||||||||||||||    
T  45502831 caactttttattttttaggttcattcaataaatgatgtatgtggtc 45502786  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 360 - 405
Target Start/End: Original strand, 53739463 - 53739508
Alignment:
Q  360 caactttttacattttaggtttattgaataaatgatgtatgtggtc 405  Q
    ||||||||||| ||||||||| ||| ||||||||||||||| ||||    
T  53739463 caactttttactttttaggttcattcaataaatgatgtatgcggtc 53739508  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 33; Significance: 0.000000003; HSPs: 7)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 372 - 404
Target Start/End: Original strand, 34176984 - 34177016
Alignment:
Q  372 ttttaggtttattgaataaatgatgtatgtggt 404  Q
    |||||||||||||||||||||||||||||||||    
T  34176984 ttttaggtttattgaataaatgatgtatgtggt 34177016  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 333 - 397
Target Start/End: Original strand, 38785764 - 38785828
Alignment:
Q  333 attactcccaccattcttaattataaccaactttttacattttaggtttattgaataaatgatgt 397  Q
    ||||||||| ||| ||| |||||||  |||||||| || ||||||||| ||||||||||||||||    
T  38785764 attactccctccagtctcaattatatgcaacttttcactttttaggttcattgaataaatgatgt 38785828  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 351 - 401
Target Start/End: Complemental strand, 46462509 - 46462459
Alignment:
Q  351 aattataaccaactttttacattttaggtttattgaataaatgatgtatgt 401  Q
    |||||||| ||| |||| || ||||||||| ||||||||||||||||||||    
T  46462509 aattataagcaatttttcactttttaggttcattgaataaatgatgtatgt 46462459  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 347 - 404
Target Start/End: Original strand, 46462387 - 46462444
Alignment:
Q  347 tcttaattataaccaactttttacattttaggtttattgaataaatgatgtatgtggt 404  Q
    |||||||||||| |||||||| || |||||| || ||| |||||||||||||| ||||    
T  46462387 tcttaattataagcaacttttcactttttagattcattaaataaatgatgtatatggt 46462444  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 369 - 405
Target Start/End: Original strand, 20215596 - 20215632
Alignment:
Q  369 acattttaggtttattgaataaatgatgtatgtggtc 405  Q
    |||||||||||| ||| ||||||||||||||||||||    
T  20215596 acattttaggttcattcaataaatgatgtatgtggtc 20215632  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 372 - 404
Target Start/End: Complemental strand, 21790213 - 21790181
Alignment:
Q  372 ttttaggtttattgaataaatgatgtatgtggt 404  Q
    |||||||||||| ||||||||||||||||||||    
T  21790213 ttttaggtttatcgaataaatgatgtatgtggt 21790181  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 342 - 402
Target Start/End: Original strand, 23599782 - 23599841
Alignment:
Q  342 accattcttaattataaccaactttttacattttaggtttattgaataaatgatgtatgtg 402  Q
    |||||| |||||||||| ||| |||| || ||||||||||||| ||| |||||||||||||    
T  23599782 accatttttaattataagcaaattttgac-ttttaggtttattcaattaatgatgtatgtg 23599841  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 32; Significance: 0.00000001; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 372 - 407
Target Start/End: Complemental strand, 7410673 - 7410638
Alignment:
Q  372 ttttaggtttattgaataaatgatgtatgtggtcca 407  Q
    ||||||||||||| ||||||||||||||||||||||    
T  7410673 ttttaggtttattaaataaatgatgtatgtggtcca 7410638  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 351 - 404
Target Start/End: Complemental strand, 6402117 - 6402064
Alignment:
Q  351 aattataaccaactttttacattttaggtttattgaataaatgatgtatgtggt 404  Q
    |||||||| |||||||| | ||||||| |||||| ||||||| |||||||||||    
T  6402117 aattataaacaacttttcatattttagatttatttaataaataatgtatgtggt 6402064  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 366 - 407
Target Start/End: Complemental strand, 26492423 - 26492382
Alignment:
Q  366 tttacattttaggtttattgaataaatgatgtatgtggtcca 407  Q
    ||||| ||||||||| ||||||| ||||||||||||||||||    
T  26492423 tttactttttaggttcattgaattaatgatgtatgtggtcca 26492382  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 360 - 404
Target Start/End: Complemental strand, 34540785 - 34540741
Alignment:
Q  360 caactttttacattttaggtttattgaataaatgatgtatgtggt 404  Q
    ||||||||||| ||| ||||| ||| |||||||||||||||||||    
T  34540785 caactttttacttttgaggttcatttaataaatgatgtatgtggt 34540741  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 31; Significance: 0.00000004; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 366 - 404
Target Start/End: Original strand, 24934577 - 24934615
Alignment:
Q  366 tttacattttaggtttattgaataaatgatgtatgtggt 404  Q
    ||||||||||||||| ||| |||||||||||||||||||    
T  24934577 tttacattttaggttcattcaataaatgatgtatgtggt 24934615  T

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Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 372 - 405
Target Start/End: Original strand, 27163197 - 27163230
Alignment:
Q  372 ttttaggtttattgaataaatgatgtatgtggtc 405  Q
    ||||||||| ||||||||||||||||||||||||    
T  27163197 ttttaggttcattgaataaatgatgtatgtggtc 27163230  T

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Target: chr7; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 347 - 404
Target Start/End: Complemental strand, 30486717 - 30486660
Alignment:
Q  347 tcttaattataaccaactttttacattttaggtttattgaataaatgatgtatgtggt 404  Q
    ||||| ||||||  || |||| || |||||| ||||||||||||||||||||||||||    
T  30486717 tcttatttataagtaaattttgactttttagatttattgaataaatgatgtatgtggt 30486660  T

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Target: chr2 (Bit Score: 31; Significance: 0.00000004; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 365 - 407
Target Start/End: Complemental strand, 32070576 - 32070534
Alignment:
Q  365 ttttacattttaggtttattgaataaatgatgtatgtggtcca 407  Q
    |||||||||||||||| ||| ||| ||||||||||||||||||    
T  32070576 ttttacattttaggttcattcaattaatgatgtatgtggtcca 32070534  T

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Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 372 - 405
Target Start/End: Original strand, 44587675 - 44587708
Alignment:
Q  372 ttttaggtttattgaataaatgatgtatgtggtc 405  Q
    ||||||||| ||||||||||||||||||||||||    
T  44587675 ttttaggttcattgaataaatgatgtatgtggtc 44587708  T

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Target: chr2; HSP #3
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 369 - 405
Target Start/End: Complemental strand, 23738429 - 23738393
Alignment:
Q  369 acattttaggtttattgaataaatgatgtatgtggtc 405  Q
    |||||||||||||||| ||||||||||||||| ||||    
T  23738429 acattttaggtttattcaataaatgatgtatgcggtc 23738393  T

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Target: scaffold1266 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: scaffold1266
Description:

Target: scaffold1266; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 356 - 405
Target Start/End: Complemental strand, 254 - 205
Alignment:
Q  356 taaccaactttttacattttaggtttattgaataaatgatgtatgtggtc 405  Q
    |||||||||||| || |||||| || ||| ||||||||||||||||||||    
T  254 taaccaacttttcactttttagattcattcaataaatgatgtatgtggtc 205  T

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Target: scaffold0263 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: scaffold0263
Description:

Target: scaffold0263; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 356 - 405
Target Start/End: Original strand, 19809 - 19858
Alignment:
Q  356 taaccaactttttacattttaggtttattgaataaatgatgtatgtggtc 405  Q
    |||||||||||| || |||||| || ||| ||||||||||||||||||||    
T  19809 taaccaacttttcactttttagattcattaaataaatgatgtatgtggtc 19858  T

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Target: chr6 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 335 - 407
Target Start/End: Complemental strand, 1858421 - 1858350
Alignment:
Q  335 tactcccaccattcttaattataaccaactttttacattttaggtttattgaataaatgatgtatgtggtcca 407  Q
    ||||||| ||||| |||| ||||| ||| |||| || ||||| ||||||| ||| ||||||||||||||||||    
T  1858421 tactccctccatttttaaatataagcaaatttt-actttttaagtttattcaattaatgatgtatgtggtcca 1858350  T

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