View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17847_high_5 (Length: 454)
Name: NF17847_high_5
Description: NF17847
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17847_high_5 |
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Alignment Details
Target: chr4 (Bit Score: 394; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 394; E-Value: 0
Query Start/End: Original strand, 16 - 435
Target Start/End: Complemental strand, 47711687 - 47711271
Alignment:
| Q |
16 |
atgcatgagtactaaagtttgtcttttttattgtttctaatttctatatacaatactgaatttttcattcatatattgcaaaaaggaaaaatatttactc |
115 |
Q |
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| T |
47711687 |
atgcatgagtactaaagtttgtcttttttattgtttctaatttctatatacaatactgaatttttcattcataaattgcaaaaaggaaaaatatttactc |
47711588 |
T |
|
| Q |
116 |
agttttcaacaaatatctgcattacaaggtcaaaattttcattattgtcaaaaataataccattgcgcgagaagaagtgtggcgggtctctagtaaatgg |
215 |
Q |
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| T |
47711587 |
agttttcaacaaatatctgcattacaaggtcaaaattttcattattgtcaaaaataataccattgcgcgagaagaagtgcggcgggtctctagtaaatgg |
47711488 |
T |
|
| Q |
216 |
ttcatctcctgtatcaacattcttgacttaggggggcatattacacctcatctttctcatagtaatattattcgccgcagtacttttatctgaggcagac |
315 |
Q |
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| T |
47711487 |
ttcatctcctgtatcaacattcttgacttaggggggcatattacaccttatctttctcatagtaatattattcgccgcagtacttttatctgaggcagac |
47711388 |
T |
|
| Q |
316 |
aactacttaatctgaggagaattttcaagacgagtctgattagtcaatgaaattgaactctgtgaggcaccaaaaccaactccatcatgctcccttgaat |
415 |
Q |
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| T |
47711387 |
aactacttaatctgaggagaattttcaa---gagtctgattagtcaatgaaattgaactctgtgaggcaccaaaaccaactccatcatgctcccttgaat |
47711291 |
T |
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| Q |
416 |
caatatttttactttttacc |
435 |
Q |
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| T |
47711290 |
caatatttttactttttacc |
47711271 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 211; Significance: 1e-115; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 211; E-Value: 1e-115
Query Start/End: Original strand, 161 - 435
Target Start/End: Original strand, 43305474 - 43305747
Alignment:
| Q |
161 |
tgtcaaaaataataccattgcgcgagaagaagtgtggcgggtctctagtaaatggttcatctcctgtatcaacattcttgacttaggggggcatattaca |
260 |
Q |
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| T |
43305474 |
tgtcaaaaataataccattgcacgagaagaagtgcggcggcgctctagcaaatggttcatctcctgtatcaacattcttgacttagggg-gcatattaca |
43305572 |
T |
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| Q |
261 |
cctcatctttctcatagtaatattattcgccgcagtacttttatctgaggcagacaactacttaatctgaggagaattttcaagacgagtctgattagtc |
360 |
Q |
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| T |
43305573 |
cctcatctttctcacagtaatattattcgccgcagtacttttatctgaggcaggcaacttcttaatctgaggagaactttcaagacgagtccgattagtc |
43305672 |
T |
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| Q |
361 |
aatgaaattgaactctgtgaggcaccaaaaccaactccatcatgctcccttgaatcaatatttttactttttacc |
435 |
Q |
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||||| |||||||||||||||||| ||||||||||||||||||||||||||||||||||| | |||||||||||| |
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| T |
43305673 |
aatgacattgaactctgtgaggcatcaaaaccaactccatcatgctcccttgaatcaatagtattactttttacc |
43305747 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 38; Significance: 0.000000000003; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 22 - 71
Target Start/End: Complemental strand, 45603672 - 45603623
Alignment:
| Q |
22 |
gagtactaaagtttgtcttttttattgtttctaatttctatatacaatac |
71 |
Q |
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|||| ||||||||| |||||||||||||||||||||||| |||||||||| |
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| T |
45603672 |
gagtgctaaagtttatcttttttattgtttctaatttctgtatacaatac |
45603623 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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