View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17847_low_1 (Length: 647)

Name: NF17847_low_1
Description: NF17847
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17847_low_1
NF17847_low_1
[»] chr6 (31 HSPs)
chr6 (16-611)||(10578799-10579390)
chr6 (175-602)||(6596094-6596518)
chr6 (16-129)||(6424085-6424198)
chr6 (308-444)||(6423833-6423969)
chr6 (16-77)||(19633344-19633405)
chr6 (398-445)||(6436835-6436882)
chr6 (398-445)||(7993631-7993678)
chr6 (306-356)||(6395553-6395603)
chr6 (19-77)||(6602488-6602546)
chr6 (523-603)||(7132143-7132223)
chr6 (194-237)||(6423989-6424032)
chr6 (400-443)||(6432759-6432802)
chr6 (16-75)||(7993306-7993365)
chr6 (306-356)||(6410711-6410761)
chr6 (537-603)||(6423743-6423809)
chr6 (527-603)||(6410532-6410608)
chr6 (391-443)||(9412050-9412102)
chr6 (405-445)||(19633024-19633064)
chr6 (401-440)||(6410627-6410666)
chr6 (20-78)||(6433085-6433143)
chr6 (31-77)||(6437149-6437195)
chr6 (317-443)||(7132234-7132360)
chr6 (317-443)||(7138080-7138206)
chr6 (306-356)||(19633116-19633166)
chr6 (538-603)||(6403407-6403472)
chr6 (400-445)||(6403502-6403547)
chr6 (544-597)||(6427025-6427078)
chr6 (398-443)||(7135157-7135202)
chr6 (317-354)||(7135246-7135283)
chr6 (551-603)||(6594124-6594176)
chr6 (306-354)||(14809717-14809765)
[»] chr5 (3 HSPs)
chr5 (16-140)||(20477197-20477321)
chr5 (392-440)||(17205662-17205710)
chr5 (15-78)||(17205955-17206018)
[»] chr1 (5 HSPs)
chr1 (396-444)||(30827723-30827771)
chr1 (391-443)||(7555124-7555176)
chr1 (16-67)||(19467188-19467239)
chr1 (402-445)||(33161122-33161165)
chr1 (16-78)||(33161432-33161494)
[»] chr7 (3 HSPs)
chr7 (16-71)||(15091353-15091408)
chr7 (16-78)||(10168810-10168872)
chr7 (16-78)||(10176335-10176397)
[»] chr8 (2 HSPs)
chr8 (28-74)||(32152209-32152255)
chr8 (394-437)||(32151900-32151943)
[»] chr4 (7 HSPs)
chr4 (401-438)||(10633967-10634004)
chr4 (308-356)||(553775-553823)
chr4 (31-74)||(1547469-1547512)
chr4 (19-74)||(6007668-6007723)
chr4 (31-74)||(12126883-12126926)
chr4 (16-66)||(1524078-1524128)
chr4 (29-74)||(2367687-2367732)


Alignment Details
Target: chr6 (Bit Score: 510; Significance: 0; HSPs: 31)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 510; E-Value: 0
Query Start/End: Original strand, 16 - 611
Target Start/End: Original strand, 10578799 - 10579390
Alignment:
Q  16 aattctctatctctcgtctccaaacaattcctctccataaccaacagtctcctattctcactcgaggtctatccctcaagagtccctttcctcaaacacc 115  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |||    
T  10578799 aattctctatctctcgtctccaaacaattcctctccataaccaacagtctcctattctcactcgacgtctatccctcaagagtccctttcctcaaatacc 10578898  T
Q  116 tactcaaaaggttccccaacctcacttccattacgcttaactactgcgtcggcatttcttgtgacattgacaacatttttcgcttaatctctagtttccc 215  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||| |||||||||     
T  10578899 tactcaaaaggttccccaacctcacttccattacgcttaactactgcgtcggcgtttcttgtgacgttgacaacatttttcgcttaatcactagtttcc- 10578997  T
Q  216 gttgaagaaactcacatcgctcgttctctccggtgaacctaagttcccgtttgagaaactcaactcgctagcactctccggcgaaagcatctttcccaca 315  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||    
T  10578998 gttgaagaaactcacatcgctcgttctctccggtgaacctaagttcccgtttgagaaactcaactcgctagctctctccggcgaaagcatctttcccaca 10579097  T
Q  316 gatgggttgcaagctttctcccaaaacataacaactttgacatgttttacttgttctactgacttcctatacaaaaatgacttgttactcattgccgatt 415  Q
    |||||||| | ||||||||||||||||||||||||||||||| |||| ||||||||||||||||| || ||||||||||||||||||||| |||||||||    
T  10579098 gatgggttacgagctttctcccaaaacataacaactttgacaagtttcacttgttctactgactttctctacaaaaatgacttgttactcgttgccgatt 10579197  T
Q  416 gtttcccattgctcaaagaactcaacctcgaactcagttgccctattctcaaaagtcaaactattttcaagaatggaggaagtcactctctgttatcaaa 515  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||   |||||||| ||||||||||||||    
T  10579198 gtttcccattgctcaaagaactcaacctcgaactcagttgccctattctcaaaagtcaaactattttcaagaat---ggaagtcaatctctgttatcaaa 10579294  T
Q  516 acgtcggttggtcaagaatcgaactgatttcattaatggaattcactctctgttatcaaagtgtccatgtattcaacatttgaatctttacaacac 611  Q
    ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||    
T  10579295 acgtcggttggtcaacaatcgaactgatttcattaatggaattcactctctgttatcaaagtgtccatgtattcaacatttgagtctttacaacac 10579390  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 222; E-Value: 1e-122
Query Start/End: Original strand, 175 - 602
Target Start/End: Original strand, 6596094 - 6596518
Alignment:
Q  175 tgtgacattgacaacatttttcgcttaatctctagtttcccgttgaagaaactcacatcgctcgttctctccggtgaacctaagttcccgtttgagaaac 274  Q
    |||||| | |||||||||||||||||||||||||||||||||||||||||||||||||  |||||| || |||| |||||||  ||||| ||| ||||||    
T  6596094 tgtgacgtcgacaacatttttcgcttaatctctagtttcccgttgaagaaactcacatttctcgttttcaccggcgaacctagattcccatttaagaaac 6596193  T
Q  275 tcaactcgctagcactctccggcgaaagcatctttcccacagatgggttgcaagctttctcccaaaacataacaactttgacatgttttacttgttctac 374  Q
    | || ||||| |  |||||||||||||||||||||||| | || ||||||| || ||||||||||||||||||||||||||| | | | ||||||||||     
T  6596194 ttaaatcgctcgttctctccggcgaaagcatctttcccgctgacgggttgcgagttttctcccaaaacataacaactttgacctctctcacttgttctat 6596293  T
Q  375 tgacttcctatacaaaaatgacttgttactcattgccgattgtttcccattgctcaaagaactcaacctcgaactcagttgccctattctcaaaagtcaa 474  Q
      |||| || |||||||||||||||||||||||||| |||||||||||||||||||||||||||||| ||||| ||| |  ||||||| || || |||||    
T  6596294 aaactttctctacaaaaatgacttgttactcattgctgattgtttcccattgctcaaagaactcaacatcgaaatcaataaccctattttccaatgtcaa 6596393  T
Q  475 actattttcaagaatggaggaagtcactctctgttatcaaaacgtcggttggtcaagaatcgaactgatttcattaatggaattcactctctgttatcaa 574  Q
    |||| ||||||||||   |||| ||||||||||||||||||||||| ||||||||| |||||||||||||||||||| | ||||||||||||||||||||    
T  6596394 actaatttcaagaat---ggaactcactctctgttatcaaaacgtcagttggtcaacaatcgaactgatttcattaacgaaattcactctctgttatcaa 6596490  T
Q  575 agtgtccatgtattcaacatttgaatct 602  Q
    | |||| || ||||||||||||||||||    
T  6596491 attgtcgatttattcaacatttgaatct 6596518  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 16 - 129
Target Start/End: Complemental strand, 6424198 - 6424085
Alignment:
Q  16 aattctctatctctcgtctccaaacaattcctctccataaccaacagtctcctattctcactcgaggtctatccctcaagagtccctttcctcaaacacc 115  Q
    |||||||| || |||||||||||||| ||||||||| ||||||||  ||||||||||||||||  ||||||   ||||| | ||||||||||||||| ||    
T  6424198 aattctctttccctcgtctccaaacagttcctctccgtaaccaactctctcctattctcactcacggtctacagctcaacactccctttcctcaaacgcc 6424099  T
Q  116 tactcaaaaggttc 129  Q
    ||||||||||||||    
T  6424098 tactcaaaaggttc 6424085  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 308 - 444
Target Start/End: Complemental strand, 6423969 - 6423833
Alignment:
Q  308 ttcccacagatgggttgcaagctttctcccaaaacataacaactttgacatgttttacttgttctactgacttcctatacaaaaatgacttgttactcat 407  Q
    |||||||| ||||||||| |||||||||||||||||||||||||||||| | | | ||||||| ||     || || | ||| |  ||| |||||||  |    
T  6423969 ttcccacaaatgggttgcgagctttctcccaaaacataacaactttgacctctctcacttgttatagcatgtttctctccaacaccgacctgttacttgt 6423870  T
Q  408 tgccgattgtttcccattgctcaaagaactcaacctc 444  Q
     ||| ||||||||||||||||||||||||||||||||    
T  6423869 ggccaattgtttcccattgctcaaagaactcaacctc 6423833  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 16 - 77
Target Start/End: Complemental strand, 19633405 - 19633344
Alignment:
Q  16 aattctctatctctcgtctccaaacaattcctctccataaccaacagtctcctattctcact 77  Q
    ||||||||||| |||||||||||||| |||||||| ||||||||  ||||||||||||||||    
T  19633405 aattctctatccctcgtctccaaacagttcctctcaataaccaattgtctcctattctcact 19633344  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 398 - 445
Target Start/End: Complemental strand, 6436882 - 6436835
Alignment:
Q  398 tgttactcattgccgattgtttcccattgctcaaagaactcaacctcg 445  Q
    ||||||||||||||||||||||||| ||||||||| ||||||||||||    
T  6436882 tgttactcattgccgattgtttccctttgctcaaacaactcaacctcg 6436835  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 398 - 445
Target Start/End: Original strand, 7993631 - 7993678
Alignment:
Q  398 tgttactcattgccgattgtttcccattgctcaaagaactcaacctcg 445  Q
    |||||||||||||| |||||||||| ||||||||||||||||||||||    
T  7993631 tgttactcattgccaattgtttccctttgctcaaagaactcaacctcg 7993678  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 306 - 356
Target Start/End: Complemental strand, 6395603 - 6395553
Alignment:
Q  306 ctttcccacagatgggttgcaagctttctcccaaaacataacaactttgac 356  Q
    ||||||||||||||||||||||||| |||||||||| || |||||||||||    
T  6395603 ctttcccacagatgggttgcaagctctctcccaaaatattacaactttgac 6395553  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 19 - 77
Target Start/End: Original strand, 6602488 - 6602546
Alignment:
Q  19 tctctatctctcgtctccaaacaattcctctccataaccaacagtctcctattctcact 77  Q
    |||||||| |||||||||||||| ||||||||| | |||||| ||||||||||||||||    
T  6602488 tctctatccctcgtctccaaacatttcctctccgtcaccaactgtctcctattctcact 6602546  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 523 - 603
Target Start/End: Complemental strand, 7132223 - 7132143
Alignment:
Q  523 ttggtcaagaatcgaactgatttcattaatggaattcactctctgttatcaaagtgtccatgtattcaacatttgaatctt 603  Q
    ||||| || |||| |||| | ||||||||||||||||||| | ||||||| ||||| | |||||| |||||||||||||||    
T  7132223 ttggtgaacaatcaaactaacttcattaatggaattcactgtatgttatccaagtggcgatgtatacaacatttgaatctt 7132143  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 194 - 237
Target Start/End: Complemental strand, 6424032 - 6423989
Alignment:
Q  194 ttcgcttaatctctagtttcccgttgaagaaactcacatcgctc 237  Q
    |||||||||||||||||||||| |||||||||||||| ||||||    
T  6424032 ttcgcttaatctctagtttcccattgaagaaactcacgtcgctc 6423989  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 400 - 443
Target Start/End: Complemental strand, 6432802 - 6432759
Alignment:
Q  400 ttactcattgccgattgtttcccattgctcaaagaactcaacct 443  Q
    ||||||||||||||||||||||| ||||||||| ||||||||||    
T  6432802 ttactcattgccgattgtttccctttgctcaaacaactcaacct 6432759  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 16 - 75
Target Start/End: Original strand, 7993306 - 7993365
Alignment:
Q  16 aattctctatctctcgtctccaaacaattcctctccataaccaacagtctcctattctca 75  Q
    |||||| ||||||||||||||||||| ||||||||||| |||| | |||||| |||||||    
T  7993306 aattctttatctctcgtctccaaacagttcctctccatcaccagccgtctccgattctca 7993365  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 306 - 356
Target Start/End: Complemental strand, 6410761 - 6410711
Alignment:
Q  306 ctttcccacagatgggttgcaagctttctcccaaaacataacaactttgac 356  Q
    |||||||| | |||||||||||| ||||||||||||||| |||||||||||    
T  6410761 ctttcccataaatgggttgcaagttttctcccaaaacattacaactttgac 6410711  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 537 - 603
Target Start/End: Complemental strand, 6423809 - 6423743
Alignment:
Q  537 aactgatttcattaatggaattcactctctgttatcaaagtgtccatgtattcaacatttgaatctt 603  Q
    |||| |||||||||||||||||| |  | ||||||| ||||||| |||||| |||||||||||||||    
T  6423809 aactaatttcattaatggaattcgcaatttgttatccaagtgtcaatgtatacaacatttgaatctt 6423743  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 527 - 603
Target Start/End: Complemental strand, 6410608 - 6410532
Alignment:
Q  527 tcaagaatcgaactgatttcattaatggaattcactctctgttatcaaagtgtccatgtattcaacatttgaatctt 603  Q
    ||||| ||||| || ||||||||||||||||||||| ||||||||| ||||| | |||| | |||||| || |||||    
T  6410608 tcaagtatcgatctaatttcattaatggaattcactatctgttatccaagtgccaatgtttacaacatatggatctt 6410532  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 391 - 443
Target Start/End: Complemental strand, 9412102 - 9412050
Alignment:
Q  391 aatgacttgttactcattgccgattgtttcccattgctcaaagaactcaacct 443  Q
    |||||||||||||||||||| || |||||||| |||||  |||||||||||||    
T  9412102 aatgacttgttactcattgctgaatgtttccctttgcttgaagaactcaacct 9412050  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 405 - 445
Target Start/End: Complemental strand, 19633064 - 19633024
Alignment:
Q  405 cattgccgattgtttcccattgctcaaagaactcaacctcg 445  Q
    |||||||||||||||||||||| | ||||||||||||||||    
T  19633064 cattgccgattgtttcccattgttgaaagaactcaacctcg 19633024  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 401 - 440
Target Start/End: Complemental strand, 6410666 - 6410627
Alignment:
Q  401 tactcattgccgattgtttcccattgctcaaagaactcaa 440  Q
    ||||| |||| |||||||||||||||||||||||||||||    
T  6410666 tactctttgctgattgtttcccattgctcaaagaactcaa 6410627  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #20
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 20 - 78
Target Start/End: Complemental strand, 6433143 - 6433085
Alignment:
Q  20 ctctatctctcgtctccaaacaattcctctccataaccaacagtctcctattctcactc 78  Q
    ||||||| |||||||||||| | ||||||||| | ||||||  ||||||||||||||||    
T  6433143 ctctatccctcgtctccaaatagttcctctccgtcaccaaccatctcctattctcactc 6433085  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #21
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 31 - 77
Target Start/End: Complemental strand, 6437195 - 6437149
Alignment:
Q  31 gtctccaaacaattcctctccataaccaacagtctcctattctcact 77  Q
    ||||||||||| ||||||||||| |||||| ||||||| ||||||||    
T  6437195 gtctccaaacagttcctctccatcaccaaccgtctcctgttctcact 6437149  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #22
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 317 - 443
Target Start/End: Complemental strand, 7132360 - 7132234
Alignment:
Q  317 atgggttgcaagctttctcccaaaacataacaactttgacatgttttacttgttctactgacttcctatacaaaaatgacttgttactcattgccgattg 416  Q
    ||||||||| |||||||||||||||||| ||||||||| ||| | |   |||||| |     || || ||||| || ||  ||||||| |||||||||||    
T  7132360 atgggttgcgagctttctcccaaaacattacaactttggcatctctcgattgttccaacatgtttctctacaacaacgatctgttacttattgccgattg 7132261  T
Q  417 tttcccattgctcaaagaactcaacct 443  Q
    ||| ||| |||| ||||||||||||||    
T  7132260 ttttccaatgcttaaagaactcaacct 7132234  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #23
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 317 - 443
Target Start/End: Complemental strand, 7138206 - 7138080
Alignment:
Q  317 atgggttgcaagctttctcccaaaacataacaactttgacatgttttacttgttctactgacttcctatacaaaaatgacttgttactcattgccgattg 416  Q
    ||||||||| |||||||||||||||||| ||||||||| ||| | |   |||||| |     || || ||||| || ||  ||||||| |||||||||||    
T  7138206 atgggttgcgagctttctcccaaaacattacaactttggcatctctcgattgttccaacacgtttctctacaacaacgatctgttacttattgccgattg 7138107  T
Q  417 tttcccattgctcaaagaactcaacct 443  Q
    ||| ||| |||| ||||||||||||||    
T  7138106 ttttccaatgcttaaagaactcaacct 7138080  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #24
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 306 - 356
Target Start/End: Complemental strand, 19633166 - 19633116
Alignment:
Q  306 ctttcccacagatgggttgcaagctttctcccaaaacataacaactttgac 356  Q
    |||||||||| ||||||||| |||||||||| ||| ||| |||||||||||    
T  19633166 ctttcccacaaatgggttgcgagctttctccgaaagcattacaactttgac 19633116  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #25
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 538 - 603
Target Start/End: Complemental strand, 6403472 - 6403407
Alignment:
Q  538 actgatttcattaatggaattcactctctgttatcaaagtgtccatgtattcaacatttgaatctt 603  Q
    ||||| || |||||||||||  ||||||||||||| ||||||  |||||| ||||||||| |||||    
T  6403472 actgactttattaatggaatatactctctgttatccaagtgtagatgtatacaacatttggatctt 6403407  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #26
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 400 - 445
Target Start/End: Complemental strand, 6403547 - 6403502
Alignment:
Q  400 ttactcattgccgattgtttcccattgctcaaagaactcaacctcg 445  Q
    |||||||||||||||||||||||   ||||||| ||||||||||||    
T  6403547 ttactcattgccgattgtttccctaagctcaaacaactcaacctcg 6403502  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #27
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 544 - 597
Target Start/End: Complemental strand, 6427078 - 6427025
Alignment:
Q  544 ttcattaatggaattcactctctgttatcaaagtgtccatgtattcaacatttg 597  Q
    |||||||||  |||||||| | ||||||| |||||||||||||| |||||||||    
T  6427078 ttcattaattcaattcactgtatgttatccaagtgtccatgtatacaacatttg 6427025  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #28
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 398 - 443
Target Start/End: Complemental strand, 7135202 - 7135157
Alignment:
Q  398 tgttactcattgccgattgtttcccattgctcaaagaactcaacct 443  Q
    ||||||| |||||||||||||| ||| ||| |||||||||||||||    
T  7135202 tgttacttattgccgattgttttccaatgcacaaagaactcaacct 7135157  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #29
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 317 - 354
Target Start/End: Complemental strand, 7135283 - 7135246
Alignment:
Q  317 atgggttgcaagctttctcccaaaacataacaactttg 354  Q
    ||||||||| |||||||||||||||||| |||||||||    
T  7135283 atgggttgcgagctttctcccaaaacattacaactttg 7135246  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #30
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 551 - 603
Target Start/End: Original strand, 6594124 - 6594176
Alignment:
Q  551 atggaattcactctctgttatcaaagtgtccatgtattcaacatttgaatctt 603  Q
    |||||||  ||||| ||||||| ||||||| |||||| |||||||||||||||    
T  6594124 atggaatgtactctttgttatccaagtgtcgatgtatacaacatttgaatctt 6594176  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #31
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 306 - 354
Target Start/End: Complemental strand, 14809765 - 14809717
Alignment:
Q  306 ctttcccacagatgggttgcaagctttctcccaaaacataacaactttg 354  Q
    ||||||| || | |||||||||| ||||||||||||||| |||||||||    
T  14809765 ctttcccgcaaaagggttgcaagatttctcccaaaacattacaactttg 14809717  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 53; Significance: 4e-21; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 16 - 140
Target Start/End: Original strand, 20477197 - 20477321
Alignment:
Q  16 aattctctatctctcgtctccaaacaattcctctccataaccaacagtctcctattctcactcgaggtctatccctcaagagtccctttcctcaaacacc 115  Q
    ||||||||||| | |||||||||||| |||||||| ||||| ||   ||||||||||||||||   ||| ||||||||| |||||||||| |||||  ||    
T  20477197 aattctctatcccgcgtctccaaacagttcctctctataacaaattctctcctattctcactcactgtcaatccctcaacagtccctttcgtcaaaggcc 20477296  T
Q  116 tactcaaaaggttccccaacctcac 140  Q
    ||||| |||||||| ||||||||||    
T  20477297 tactccaaaggttcaccaacctcac 20477321  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 392 - 440
Target Start/End: Complemental strand, 17205710 - 17205662
Alignment:
Q  392 atgacttgttactcattgccgattgtttcccattgctcaaagaactcaa 440  Q
    ||||| ||||||||||||||||||||||||| |||||||||||||||||    
T  17205710 atgacctgttactcattgccgattgtttccctttgctcaaagaactcaa 17205662  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 15 - 78
Target Start/End: Complemental strand, 17206018 - 17205955
Alignment:
Q  15 aaattctctatctctcgtctccaaacaattcctctccataaccaacagtctcctattctcactc 78  Q
    |||||||||||| |||||||||||||| || ||||| || ||| ||||| ||| ||||||||||    
T  17206018 aaattctctatccctcgtctccaaacagttactctctatcaccgacagtttccgattctcactc 17205955  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 41; Significance: 0.00000000000006; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 396 - 444
Target Start/End: Complemental strand, 30827771 - 30827723
Alignment:
Q  396 cttgttactcattgccgattgtttcccattgctcaaagaactcaacctc 444  Q
    ||||||||||||||||||||||||||| ||||||||| |||||||||||    
T  30827771 cttgttactcattgccgattgtttccctttgctcaaacaactcaacctc 30827723  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 391 - 443
Target Start/End: Complemental strand, 7555176 - 7555124
Alignment:
Q  391 aatgacttgttactcattgccgattgtttcccattgctcaaagaactcaacct 443  Q
    |||||||||||||||||||| || |||||||| |||||| |||||||||||||    
T  7555176 aatgacttgttactcattgctgaatgtttccctttgctcgaagaactcaacct 7555124  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 16 - 67
Target Start/End: Original strand, 19467188 - 19467239
Alignment:
Q  16 aattctctatctctcgtctccaaacaattcctctccataaccaacagtctcc 67  Q
    |||||||| || || |||||||||||||||||||| ||||||||| ||||||    
T  19467188 aattctctttcccttgtctccaaacaattcctctcaataaccaaccgtctcc 19467239  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 402 - 445
Target Start/End: Complemental strand, 33161165 - 33161122
Alignment:
Q  402 actcattgccgattgtttcccattgctcaaagaactcaacctcg 445  Q
    |||| |||||||||||||||| ||||||||| ||||||||||||    
T  33161165 actcgttgccgattgtttccctttgctcaaaaaactcaacctcg 33161122  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 16 - 78
Target Start/End: Complemental strand, 33161494 - 33161432
Alignment:
Q  16 aattctctatctctcgtctccaaacaattcctctccataaccaacagtctcctattctcactc 78  Q
    ||||||||||| |||||||||||||| || |||||||| || || ||||| | ||||||||||    
T  33161494 aattctctatccctcgtctccaaacagtttctctccatcactaatagtcttcgattctcactc 33161432  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 36; Significance: 0.00000000006; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 16 - 71
Target Start/End: Original strand, 15091353 - 15091408
Alignment:
Q  16 aattctctatctctcgtctccaaacaattcctctccataaccaacagtctcctatt 71  Q
    |||||||| || |||||||||||||| ||||||||||| ||||||||||| |||||    
T  15091353 aattctctctccctcgtctccaaacagttcctctccatcaccaacagtcttctatt 15091408  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 16 - 78
Target Start/End: Original strand, 10168810 - 10168872
Alignment:
Q  16 aattctctatctctcgtctccaaacaattcctctccataaccaacagtctcctattctcactc 78  Q
    ||||||||||| || ||||||||||| ||||||||||| ||||||| ||| | ||| ||||||    
T  10168810 aattctctatcccttgtctccaaacagttcctctccatcaccaacactcttcgattatcactc 10168872  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 16 - 78
Target Start/End: Original strand, 10176335 - 10176397
Alignment:
Q  16 aattctctatctctcgtctccaaacaattcctctccataaccaacagtctcctattctcactc 78  Q
    ||||||||||| || ||||||||||| ||||||||||| ||||||| ||| | ||| ||||||    
T  10176335 aattctctatcccttgtctccaaacagttcctctccatcaccaacactcttcgattatcactc 10176397  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 35; Significance: 0.0000000002; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 28 - 74
Target Start/End: Complemental strand, 32152255 - 32152209
Alignment:
Q  28 ctcgtctccaaacaattcctctccataaccaacagtctcctattctc 74  Q
    |||||||||||||| ||||||||||| ||||||||||||| ||||||    
T  32152255 ctcgtctccaaacagttcctctccatcaccaacagtctccgattctc 32152209  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 394 - 437
Target Start/End: Complemental strand, 32151943 - 32151900
Alignment:
Q  394 gacttgttactcattgccgattgtttcccattgctcaaagaact 437  Q
    |||||||| |||||||||||||||||||| |||||| |||||||    
T  32151943 gacttgttcctcattgccgattgtttccctttgctcgaagaact 32151900  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 34; Significance: 0.0000000009; HSPs: 7)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 401 - 438
Target Start/End: Original strand, 10633967 - 10634004
Alignment:
Q  401 tactcattgccgattgtttcccattgctcaaagaactc 438  Q
    |||||||||||||||||||||| |||||||||||||||    
T  10633967 tactcattgccgattgtttccctttgctcaaagaactc 10634004  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 308 - 356
Target Start/End: Complemental strand, 553823 - 553775
Alignment:
Q  308 ttcccacagatgggttgcaagctttctcccaaaacataacaactttgac 356  Q
    ||||| || ||||||||| |||||||||||||||||| |||||||||||    
T  553823 ttcccgcaaatgggttgcgagctttctcccaaaacattacaactttgac 553775  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 31 - 74
Target Start/End: Original strand, 1547469 - 1547512
Alignment:
Q  31 gtctccaaacaattcctctccataaccaacagtctcctattctc 74  Q
    ||||||||||||||||||||||| |||||| |||||| ||||||    
T  1547469 gtctccaaacaattcctctccatcaccaaccgtctccgattctc 1547512  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 19 - 74
Target Start/End: Complemental strand, 6007723 - 6007668
Alignment:
Q  19 tctctatctctcgtctccaaacaattcctctccataaccaacagtctcctattctc 74  Q
    ||||| || |||||||| ||||| ||||||||||| ||||||||||||| ||||||    
T  6007723 tctctctccctcgtctcgaaacagttcctctccatcaccaacagtctccgattctc 6007668  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 31 - 74
Target Start/End: Complemental strand, 12126926 - 12126883
Alignment:
Q  31 gtctccaaacaattcctctccataaccaacagtctcctattctc 74  Q
    |||||||||||||| |||||||| |||||| |||||||||||||    
T  12126926 gtctccaaacaatttctctccatcaccaaccgtctcctattctc 12126883  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 16 - 66
Target Start/End: Original strand, 1524078 - 1524128
Alignment:
Q  16 aattctctatctctcgtctccaaacaattcctctccataaccaacagtctc 66  Q
    |||||||| ||| | ||||| ||||||||||||||||| ||||||||||||    
T  1524078 aattctctctctttggtctctaaacaattcctctccattaccaacagtctc 1524128  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 29 - 74
Target Start/End: Original strand, 2367687 - 2367732
Alignment:
Q  29 tcgtctccaaacaattcctctccataaccaacagtctcctattctc 74  Q
    |||||||||||||||| |||||||| |||||| |||||| ||||||    
T  2367687 tcgtctccaaacaatttctctccatcaccaaccgtctccgattctc 2367732  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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