View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17847_low_10 (Length: 333)

Name: NF17847_low_10
Description: NF17847
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17847_low_10
NF17847_low_10
[»] chr7 (5 HSPs)
chr7 (16-195)||(3861145-3861324)
chr7 (179-298)||(3861466-3861585)
chr7 (20-86)||(2843042-2843108)
chr7 (18-68)||(6559085-6559135)
chr7 (20-86)||(35261507-35261573)
[»] chr1 (5 HSPs)
chr1 (21-84)||(799655-799718)
chr1 (20-66)||(50730828-50730874)
chr1 (20-68)||(38520354-38520402)
chr1 (20-86)||(41081505-41081571)
chr1 (20-68)||(31130412-31130460)
[»] scaffold0113 (1 HSPs)
scaffold0113 (42-86)||(36491-36535)
[»] chr5 (1 HSPs)
chr5 (20-86)||(20257497-20257563)
[»] chr4 (2 HSPs)
chr4 (20-86)||(46990932-46990998)
chr4 (43-84)||(36184776-36184817)
[»] chr2 (3 HSPs)
chr2 (16-86)||(40625858-40625928)
chr2 (42-86)||(13718971-13719015)
chr2 (22-86)||(30923276-30923340)
[»] scaffold0039 (1 HSPs)
scaffold0039 (43-86)||(53219-53262)
[»] chr8 (3 HSPs)
chr8 (20-86)||(11725897-11725963)
chr8 (20-86)||(28240058-28240124)
chr8 (18-62)||(28086655-28086699)
[»] chr6 (2 HSPs)
chr6 (20-86)||(28634914-28634980)
chr6 (43-88)||(8266863-8266908)
[»] chr3 (1 HSPs)
chr3 (43-84)||(46979803-46979844)


Alignment Details
Target: chr7 (Bit Score: 172; Significance: 2e-92; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 172; E-Value: 2e-92
Query Start/End: Original strand, 16 - 195
Target Start/End: Original strand, 3861145 - 3861324
Alignment:
Q  16 gttatgagtttgttcacatattcgtaatttacgtttttagtgatgttgaatgaggtactctatcaatttgatcaccatctcttgaatacctgtgacaaat 115  Q
    ||||||||||||||||||||||| |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||    
T  3861145 gttatgagtttgttcacatattcataatttacgtttttagtgatgttgaatggggtactctatcaatttgatcaccatctcttgaatacctgtgacaaat 3861244  T
Q  116 catctaaatcctataatatatttgagttagaagatttttccaatctggtcttaactttgagggtttccaaagtaacattt 195  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3861245 catctaaatcctataatatatttgagttagaagatttttccaatctggtcttaactttgagggtttccaaagtaacattt 3861324  T

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Target: chr7; HSP #2
Raw Score: 120; E-Value: 2e-61
Query Start/End: Original strand, 179 - 298
Target Start/End: Original strand, 3861466 - 3861585
Alignment:
Q  179 tttccaaagtaacatttaactacaaccaacaatatcttttaaataaaatgcaccacaaagccactaccataaaacaatcaaacaactgaacaacaagaat 278  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3861466 tttccaaagtaacatttaactacaaccaacaatatcttttaaataaaatgcaccacaaagccactaccataaaacaatcaaacaactgaacaacaagaat 3861565  T
Q  279 acacatgcaacacgcaagat 298  Q
    ||||||||||||||||||||    
T  3861566 acacatgcaacacgcaagat 3861585  T

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Target: chr7; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 20 - 86
Target Start/End: Complemental strand, 2843108 - 2843042
Alignment:
Q  20 tgagtttgttcacatattcgtaatttacgtttttagtgatgttgaatgaggtactctatcaatttga 86  Q
    ||||||||||||||||||| |  ||||||||||||| | |||||||||| ||| ||| |||||||||    
T  2843108 tgagtttgttcacatattcatcctttacgtttttagcggtgttgaatgatgtaatctctcaatttga 2843042  T

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Target: chr7; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 18 - 68
Target Start/End: Original strand, 6559085 - 6559135
Alignment:
Q  18 tatgagtttgttcacatattcgtaatttacgtttttagtgatgttgaatga 68  Q
    ||||||||||||||||||||| | |||||||||||||||  ||||||||||    
T  6559085 tatgagtttgttcacatattcatcatttacgtttttagtagtgttgaatga 6559135  T

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Target: chr7; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 20 - 86
Target Start/End: Original strand, 35261507 - 35261573
Alignment:
Q  20 tgagtttgttcacatattcgtaatttacgtttttagtgatgttgaatgaggtactctatcaatttga 86  Q
    ||||||||||| || |||| |  |||| |||||||||| |||| ||||| |||||||||||||||||    
T  35261507 tgagtttgttcgcagattcatcctttatgtttttagtggtgttaaatgatgtactctatcaatttga 35261573  T

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Target: chr1 (Bit Score: 44; Significance: 5e-16; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 21 - 84
Target Start/End: Complemental strand, 799718 - 799655
Alignment:
Q  21 gagtttgttcacatattcgtaatttacgtttttagtgatgttgaatgaggtactctatcaattt 84  Q
    |||||||||||||||||| | ||||||||||||| ||||||||||||| ||||| |||||||||    
T  799718 gagtttgttcacatattcatcatttacgtttttaatgatgttgaatgatgtactttatcaattt 799655  T

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Target: chr1; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 20 - 66
Target Start/End: Original strand, 50730828 - 50730874
Alignment:
Q  20 tgagtttgttcacatattcgtaatttacgtttttagtgatgttgaat 66  Q
    ||||||||||||||||||| | |||||||||||||| ||||||||||    
T  50730828 tgagtttgttcacatattcatcatttacgtttttagcgatgttgaat 50730874  T

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Target: chr1; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 20 - 68
Target Start/End: Complemental strand, 38520402 - 38520354
Alignment:
Q  20 tgagtttgttcacatattcgtaatttacgtttttagtgatgttgaatga 68  Q
    |||||||||||||| |||| |  ||||||||||||||||||||||||||    
T  38520402 tgagtttgttcacaaattcatcctttacgtttttagtgatgttgaatga 38520354  T

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Target: chr1; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 20 - 86
Target Start/End: Complemental strand, 41081571 - 41081505
Alignment:
Q  20 tgagtttgttcacatattcgtaatttacgtttttagtgatgttgaatgaggtactctatcaatttga 86  Q
    |||||||||||||| |||| |  |||||||||||||   |||||||||| |||||||||| ||||||    
T  41081571 tgagtttgttcacagattcatgttttacgtttttagcactgttgaatgatgtactctatcgatttga 41081505  T

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Target: chr1; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 20 - 68
Target Start/End: Complemental strand, 31130460 - 31130412
Alignment:
Q  20 tgagtttgttcacatattcgtaatttacgtttttagtgatgttgaatga 68  Q
    ||||||||||||||||||| |  ||||| ||||||| ||||||||||||    
T  31130460 tgagtttgttcacatattcatcctttacatttttagcgatgttgaatga 31130412  T

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Target: scaffold0113 (Bit Score: 37; Significance: 0.000000000008; HSPs: 1)
Name: scaffold0113
Description:

Target: scaffold0113; HSP #1
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 42 - 86
Target Start/End: Complemental strand, 36535 - 36491
Alignment:
Q  42 atttacgtttttagtgatgttgaatgaggtactctatcaatttga 86  Q
    |||||||||||||| |||||||||||| |||||||||||||||||    
T  36535 atttacgtttttagcgatgttgaatgaagtactctatcaatttga 36491  T

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Target: chr5 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 20 - 86
Target Start/End: Complemental strand, 20257563 - 20257497
Alignment:
Q  20 tgagtttgttcacatattcgtaatttacgtttttagtgatgttgaatgaggtactctatcaatttga 86  Q
    |||||||||||||| |||| | |||||||||||||| ||||||||||||  || |||||| ||||||    
T  20257563 tgagtttgttcacagattcatcatttacgtttttagcgatgttgaatgatataatctatcgatttga 20257497  T

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Target: chr4 (Bit Score: 35; Significance: 0.0000000001; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 20 - 86
Target Start/End: Complemental strand, 46990998 - 46990932
Alignment:
Q  20 tgagtttgttcacatattcgtaatttacgtttttagtgatgttgaatgaggtactctatcaatttga 86  Q
    ||||||||||| || |||| | ||||||||||||||||  ||||||||| |||||||||| ||||||    
T  46990998 tgagtttgttcgcagattcatcatttacgtttttagtggcgttgaatgatgtactctatcgatttga 46990932  T

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Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 43 - 84
Target Start/End: Original strand, 36184776 - 36184817
Alignment:
Q  43 tttacgtttttagtgatgttgaatgaggtactctatcaattt 84  Q
    |||||||||||||  ||||||||||| |||||||||||||||    
T  36184776 tttacgtttttagcaatgttgaatgatgtactctatcaattt 36184817  T

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Target: chr2 (Bit Score: 35; Significance: 0.0000000001; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 16 - 86
Target Start/End: Complemental strand, 40625928 - 40625858
Alignment:
Q  16 gttatgagtttgttcacatattcgtaatttacgtttttagtgatgttgaatgaggtactctatcaatttga 86  Q
    ||||||||||||||| || |||| | |||||||||||||| |||||||||||| ||| ||| || ||||||    
T  40625928 gttatgagtttgttcgcagattcatcatttacgtttttagcgatgttgaatgatgtaatctctcgatttga 40625858  T

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Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 42 - 86
Target Start/End: Complemental strand, 13719015 - 13718971
Alignment:
Q  42 atttacgtttttagtgatgttgaatgaggtactctatcaatttga 86  Q
    |||||||||||||| |||||||||||| | ||||||||| |||||    
T  13719015 atttacgtttttagcgatgttgaatgatgcactctatcattttga 13718971  T

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Target: chr2; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 22 - 86
Target Start/End: Complemental strand, 30923340 - 30923276
Alignment:
Q  22 agtttgttcacatattcgtaatttacgtttttagtgatgttgaatgaggtactctatcaatttga 86  Q
    ||||||||| || |||| | ||||||| ||||||  ||||| ||||| |||||||||||||||||    
T  30923340 agtttgttcgcagattcattatttacgattttagcaatgttaaatgatgtactctatcaatttga 30923276  T

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Target: scaffold0039 (Bit Score: 32; Significance: 0.000000007; HSPs: 1)
Name: scaffold0039
Description:

Target: scaffold0039; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 43 - 86
Target Start/End: Complemental strand, 53262 - 53219
Alignment:
Q  43 tttacgtttttagtgatgttgaatgaggtactctatcaatttga 86  Q
    |||| ||||||||||||||||||||| ||||| |||||||||||    
T  53262 tttatgtttttagtgatgttgaatgatgtactatatcaatttga 53219  T

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Target: chr8 (Bit Score: 31; Significance: 0.00000003; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 20 - 86
Target Start/End: Original strand, 11725897 - 11725963
Alignment:
Q  20 tgagtttgttcacatattcgtaatttacgtttttagtgatgttgaatgaggtactctatcaatttga 86  Q
    |||||||||||||| |||| |  ||||||||||||| | |||||||||| ||| ||| |||||||||    
T  11725897 tgagtttgttcacagattcatcctttacgtttttagcggtgttgaatgatgtaatctctcaatttga 11725963  T

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Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 20 - 86
Target Start/End: Original strand, 28240058 - 28240124
Alignment:
Q  20 tgagtttgttcacatattcgtaatttacgtttttagtgatgttgaatgaggtactctatcaatttga 86  Q
    |||||||||||||| |||| |  ||||||||||||| |||||||||||| |||  ||||| ||||||    
T  28240058 tgagtttgttcacagattcatcctttacgtttttagcgatgttgaatgacgtaacctatcgatttga 28240124  T

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Target: chr8; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 18 - 62
Target Start/End: Complemental strand, 28086699 - 28086655
Alignment:
Q  18 tatgagtttgttcacatattcgtaatttacgtttttagtgatgtt 62  Q
    ||||||||||||||||||||| | || ||||||||||| ||||||    
T  28086699 tatgagtttgttcacatattcatcatctacgtttttagcgatgtt 28086655  T

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Target: chr6 (Bit Score: 31; Significance: 0.00000003; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 20 - 86
Target Start/End: Complemental strand, 28634980 - 28634914
Alignment:
Q  20 tgagtttgttcacatattcgtaatttacgtttttagtgatgttgaatgaggtactctatcaatttga 86  Q
    |||||||||||||| |||| |  ||||||||||||| |||||||||||| |||  ||||| ||||||    
T  28634980 tgagtttgttcacagattcatcctttacgtttttagcgatgttgaatgatgtaacctatcgatttga 28634914  T

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Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 43 - 88
Target Start/End: Original strand, 8266863 - 8266908
Alignment:
Q  43 tttacgtttttagtgatgttgaatgaggtactctatcaatttgatc 88  Q
    |||| |||||||| || ||||||||| |||||||||||||||||||    
T  8266863 tttatgtttttagcgaagttgaatgatgtactctatcaatttgatc 8266908  T

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Target: chr3 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 43 - 84
Target Start/End: Complemental strand, 46979844 - 46979803
Alignment:
Q  43 tttacgtttttagtgatgttgaatgaggtactctatcaattt 84  Q
    ||||||||||||||| |||||||| | |||||||||||||||    
T  46979844 tttacgtttttagtgctgttgaataatgtactctatcaattt 46979803  T

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