View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17847_low_25 (Length: 232)

Name: NF17847_low_25
Description: NF17847
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17847_low_25
NF17847_low_25
[»] chr1 (1 HSPs)
chr1 (1-229)||(19467124-19467352)
[»] chr7 (4 HSPs)
chr7 (121-172)||(10168803-10168854)
chr7 (121-172)||(10176328-10176379)
chr7 (119-169)||(10615966-10616016)
chr7 (116-169)||(15091349-15091402)
[»] chr6 (3 HSPs)
chr6 (122-169)||(19633362-19633409)
chr6 (114-168)||(10578796-10578850)
chr6 (121-168)||(6424154-6424201)
[»] chr4 (2 HSPs)
chr4 (113-156)||(1547463-1547506)
chr4 (113-161)||(2367678-2367726)
[»] chr8 (1 HSPs)
chr8 (100-169)||(32152202-32152271)
[»] chr3 (1 HSPs)
chr3 (120-169)||(13469402-13469451)


Alignment Details
Target: chr1 (Bit Score: 225; Significance: 1e-124; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 225; E-Value: 1e-124
Query Start/End: Original strand, 1 - 229
Target Start/End: Complemental strand, 19467352 - 19467124
Alignment:
Q  1 cccgtcgagttcattgtacaatgcgaatttgagggagtttaggttggtgaatctttggaagatgggacggatactgatggttggagaaaagttaacaacg 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||    
T  19467352 cccgtcgagttcattgtacaatgcgaatttgagggagtttaggttggtgaatctttggaagatggggcggatactgatggttggagaaaagttaacaacg 19467253  T
Q  101 gttatagataaacggagacggttggttattgagaggaattgtttggagacaagggaaagagaattcaagatagattctgagtgacgggagaagaaactgt 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  19467252 gttatagataaacggagacggttggttattgagaggaattgtttggagacaagggaaagagaattcaagatagattctgagtgacgggagaagaaactgt 19467153  T
Q  201 gaggaactgtttggtactggttgatgatg 229  Q
    |||||||||||||||||||||||||||||    
T  19467152 gaggaactgtttggtactggttgatgatg 19467124  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 36; Significance: 0.00000000002; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 121 - 172
Target Start/End: Complemental strand, 10168854 - 10168803
Alignment:
Q  121 gttggttattgagaggaattgtttggagacaagggaaagagaattcaagata 172  Q
    |||||| || |||||||| ||||||||||||||||| |||||||||||||||    
T  10168854 gttggtgatggagaggaactgtttggagacaagggatagagaattcaagata 10168803  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 121 - 172
Target Start/End: Complemental strand, 10176379 - 10176328
Alignment:
Q  121 gttggttattgagaggaattgtttggagacaagggaaagagaattcaagata 172  Q
    |||||| || |||||||| ||||||||||||||||| |||||||||||||||    
T  10176379 gttggtgatggagaggaactgtttggagacaagggatagagaattcaagata 10176328  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 119 - 169
Target Start/End: Original strand, 10615966 - 10616016
Alignment:
Q  119 cggttggttattgagaggaattgtttggagacaagggaaagagaattcaag 169  Q
    |||||||| || ||||||| ||| |||||||||||||| ||||||||||||    
T  10615966 cggttggtgatggagaggagttgcttggagacaagggagagagaattcaag 10616016  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 116 - 169
Target Start/End: Complemental strand, 15091402 - 15091349
Alignment:
Q  116 agacggttggttattgagaggaattgtttggagacaagggaaagagaattcaag 169  Q
    |||| |||||| || |||||||| ||||||||||| ||||| ||||||||||||    
T  15091402 agactgttggtgatggagaggaactgtttggagacgagggagagagaattcaag 15091349  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 36; Significance: 0.00000000002; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 122 - 169
Target Start/End: Original strand, 19633362 - 19633409
Alignment:
Q  122 ttggttattgagaggaattgtttggagacaagggaaagagaattcaag 169  Q
    ||||||||||||||||| ||||||||||| ||||| ||||||||||||    
T  19633362 ttggttattgagaggaactgtttggagacgagggatagagaattcaag 19633409  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 114 - 168
Target Start/End: Complemental strand, 10578850 - 10578796
Alignment:
Q  114 ggagacggttggttattgagaggaattgtttggagacaagggaaagagaattcaa 168  Q
    |||||| ||||||||| |||||||||||||||||||| || || |||||||||||    
T  10578850 ggagactgttggttatggagaggaattgtttggagacgagagatagagaattcaa 10578796  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 121 - 168
Target Start/End: Original strand, 6424154 - 6424201
Alignment:
Q  121 gttggttattgagaggaattgtttggagacaagggaaagagaattcaa 168  Q
    ||||||||  |||||||| ||||||||||| |||||||||||||||||    
T  6424154 gttggttacggagaggaactgtttggagacgagggaaagagaattcaa 6424201  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 36; Significance: 0.00000000002; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 113 - 156
Target Start/End: Complemental strand, 1547506 - 1547463
Alignment:
Q  113 cggagacggttggttattgagaggaattgtttggagacaaggga 156  Q
    |||||||||||||| || ||||||||||||||||||||||||||    
T  1547506 cggagacggttggtgatggagaggaattgtttggagacaaggga 1547463  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 113 - 161
Target Start/End: Complemental strand, 2367726 - 2367678
Alignment:
Q  113 cggagacggttggttattgagaggaattgtttggagacaagggaaagag 161  Q
    |||||||||||||| || ||||| |||||||||||||| | ||||||||    
T  2367726 cggagacggttggtgatggagagaaattgtttggagacgatggaaagag 2367678  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 100 - 169
Target Start/End: Original strand, 32152202 - 32152271
Alignment:
Q  100 ggttatagataaacggagacggttggttattgagaggaattgtttggagacaagggaaagagaattcaag 169  Q
    ||||| ||| || ||||||| |||||| || |||||||| ||||||||||| ||||| || |||||||||    
T  32152202 ggttaaagagaatcggagactgttggtgatggagaggaactgtttggagacgagggagagtgaattcaag 32152271  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 120 - 169
Target Start/End: Complemental strand, 13469451 - 13469402
Alignment:
Q  120 ggttggttattgagaggaattgtttggagacaagggaaagagaattcaag 169  Q
    ||||||| || ||||||| ||| |||||||||||||| ||||||||||||    
T  13469451 ggttggtgatagagaggagttgcttggagacaagggagagagaattcaag 13469402  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University