View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17847_low_3 (Length: 612)
Name: NF17847_low_3
Description: NF17847
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17847_low_3 |
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Alignment Details
Target: chr1 (Bit Score: 364; Significance: 0; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 364; E-Value: 0
Query Start/End: Original strand, 12 - 420
Target Start/End: Complemental strand, 42039253 - 42038845
Alignment:
| Q |
12 |
atgaacaaacattgtatcaaaatttgttatgaaatattttattgattcgtattatttgtcactttagaatatnnnnnnntattaagagtaggatggaacc |
111 |
Q |
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| T |
42039253 |
atgaacaaacattgtatcaaaatttgttatgaaatattttattgattcgttttatttgtcactttagaatataaaaaaatattaagagtaggatggaacc |
42039154 |
T |
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| Q |
112 |
tgcggctattcctagaagatcgtcttcagatatgattgctctaggaattttttgagcaattttattttcccacaaagaagcaagctcattcatgctgtaa |
211 |
Q |
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|||||||||||||||||||||||||||||| | ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42039153 |
tgcggctattcctagaagatcgtcttcagagacgattgctctaggaatttttcgagcaattttattttcccacaaagaagcaagctcattcatgctgtaa |
42039054 |
T |
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| Q |
212 |
cagttggtagagggtcgaaaatgaacacttttgttgattgttctttcatcatcaacaaccttcattgtgaacttgccaatatcatagccatcaacaaagt |
311 |
Q |
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| T |
42039053 |
cagttggtagagggtcgaaaatgaacacttttgttgattgttctttcatcatcaacaaccttcattgtgaacttgccaatatcatagccatcaacaaagt |
42038954 |
T |
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| Q |
312 |
aagctgcacaatcaatcacattctatatgttaaattaatactaatatgatattattatgattgatgtgtgacaaagaatcggtacatgttcagtatcaca |
411 |
Q |
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| T |
42038953 |
acgctgcacaatcaatcacattctatatgttaaattaatactaatatgatattattatgattgatgtgtgacaaagaatcggtacatgttcagtatcaca |
42038854 |
T |
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| Q |
412 |
ctgactaag |
420 |
Q |
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| T |
42038853 |
gtgactaag |
42038845 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 184; E-Value: 3e-99
Query Start/End: Original strand, 393 - 596
Target Start/End: Complemental strand, 42038840 - 42038637
Alignment:
| Q |
393 |
gtacatgttcagtatcacactgactaagtgagtgactttgccacaatcacatgggctcaacgtgattctggcaaaaccaccgtgatatcagacacgtact |
492 |
Q |
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|||||||||||||||| || ||||||||| |||||||||||||||||||||| ||||||||||||||||||||||||||| ||||||||||||||||||| |
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| T |
42038840 |
gtacatgttcagtatcccagtgactaagtcagtgactttgccacaatcacatcggctcaacgtgattctggcaaaaccactgtgatatcagacacgtact |
42038741 |
T |
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| Q |
493 |
tagtgtggttgtacctttgacattgccatgaccatagatgtgcaattgatccaacggtggaggaagctgtgatggatgacaattgtcatagtatggccaa |
592 |
Q |
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| T |
42038740 |
tagtgtggttgtacctttgacattgccatgaccatagatgtgcaattgatccaacggtggaggaagctgtgatggatgacaattgtcatagtatggccaa |
42038641 |
T |
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| Q |
593 |
gatg |
596 |
Q |
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|||| |
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| T |
42038640 |
gatg |
42038637 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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