View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17847_low_34 (Length: 202)
Name: NF17847_low_34
Description: NF17847
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17847_low_34 |
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Alignment Details
Target: chr4 (Bit Score: 154; Significance: 7e-82; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 154; E-Value: 7e-82
Query Start/End: Original strand, 17 - 182
Target Start/End: Complemental strand, 8687357 - 8687192
Alignment:
| Q |
17 |
agtaactagtaatgcacttgctttgtttcaaagttatgctacaaggtatcgacaagcagcggctagaaccgtcaagaagccatgaaaaactttaaatcat |
116 |
Q |
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| T |
8687357 |
agtaactagtaatgcacttgctttgtttcaaagttatgctactaggtatcgacaagcagcggctagaaccgtcaagaagccatgaaaaacttgaaatcat |
8687258 |
T |
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| Q |
117 |
accttattttatcaccccttgtttgtccatgtatatacacatgttttctctttgggtggttttaca |
182 |
Q |
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| T |
8687257 |
accttattttatcaccccttgtttgtccatgtatatacacatgttttttctttgggtggttttaca |
8687192 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 117; E-Value: 8e-60
Query Start/End: Original strand, 17 - 182
Target Start/End: Original strand, 8675109 - 8675281
Alignment:
| Q |
17 |
agtaactagtaatgcacttgctttgtttcaaagttatgctacaaggtatcgacaagcag---cggctagaaccgtcaagaagccatgaaaaac-tttaaa |
112 |
Q |
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| T |
8675109 |
agtaactagtaatgcacttgctttgtttcaaagttatgctacaaggtatcgacaagcagccacggctagaactgtcaagaagccatgaaaaacttttaaa |
8675208 |
T |
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| Q |
113 |
tcataccttattttatcaccccttgtttgtccatgtat---atacacatgttttctctttgggtggttttaca |
182 |
Q |
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| T |
8675209 |
tcataacttattttatcaccccttgtttgtccatgtatatgatatacatgttttttcttcgggtggttttaca |
8675281 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 116; E-Value: 3e-59
Query Start/End: Original strand, 17 - 182
Target Start/End: Original strand, 8693340 - 8693509
Alignment:
| Q |
17 |
agtaactagtaatgcacttgctttgtttcaaagttatgctacaaggtatcgacaagcag---cggctagaaccgtcaagaagccatgaaaaactttaaat |
113 |
Q |
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| T |
8693340 |
agtaactagtaatgcacttgctttgtttcaaagttatgctacaaggtatcgacaagcagccacggctagaacttcgaagaagccatgaaaaactttaaat |
8693439 |
T |
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| Q |
114 |
cataccttattttatcaccccttgtttgtccatgtatat-acacatgttttctctttgggtggttttaca |
182 |
Q |
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| T |
8693440 |
cataccttattttgtcaccccttgtttgttcatgtatatgatacatgttttttctttgggtggttttaca |
8693509 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 75; E-Value: 9e-35
Query Start/End: Original strand, 21 - 179
Target Start/End: Complemental strand, 8695922 - 8695766
Alignment:
| Q |
21 |
actagtaatgcacttgctttgtttcaaagttatgctacaaggtatcgacaagcagcggctagaaccgtcaagaagccatgaaaaactttaaatcatacct |
120 |
Q |
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| T |
8695922 |
actagtaacgcacttgctttgtttcaaagttatgctacaaggtatcgacaagaagcagctagaacttccaagaagccatgaaaatcttt-aatcatac-- |
8695826 |
T |
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| Q |
121 |
tattttatcaccccttgtttgtccatgtatat-acacat-gttttctctttgggtggtttt |
179 |
Q |
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| T |
8695825 |
-tttttgtcaccctttgtttgtccatgtatatgatacatggttttttctttgggtggtttt |
8695766 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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