View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17847_low_4 (Length: 534)
Name: NF17847_low_4
Description: NF17847
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17847_low_4 |
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Alignment Details
Target: chr3 (Bit Score: 354; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 354; E-Value: 0
Query Start/End: Original strand, 51 - 517
Target Start/End: Complemental strand, 42095897 - 42095408
Alignment:
| Q |
51 |
caaatataatagtcgataaatagctctttagaaaacaagtata----acttgatctacttca---------------ttcttttttggaatccgactcag |
131 |
Q |
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| T |
42095897 |
caaatataatagtcgataaatagctctttagaaaacaagtatagagtacttgatctacttcaatttacagtgcttcattcttttttggaatccgagtcag |
42095798 |
T |
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| Q |
132 |
ctccaatgatgcactttaatagccccgcgtgaaaccattgatttaattttgctacaatttggcaatgatttattctgctgcttaatactcctatttgcct |
231 |
Q |
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| T |
42095797 |
ctccaatgatgcactttaatagccccgcgtgaaaccattgatttaattttgctacaatttggcaatgatttattctgctgcttaatactcctatttgcct |
42095698 |
T |
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| Q |
232 |
tcaagtcgcatctttccctcttaaaaaatttccttttcatatgtatggtaataatgataatgataatgattataacattaaaacacagctgaaatcaata |
331 |
Q |
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| T |
42095697 |
tcaagttgcatctttccctcttaaaaaatttccttttcatatgtatggtaacaatgataa------tgattataacattaaaacacagctgaaatcaata |
42095604 |
T |
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| Q |
332 |
gcatgatcatag---------tcgttttgggtaatgattcatatggacacttcactataaataaacatcactagcctcatctacatttcaattcaatcat |
422 |
Q |
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| T |
42095603 |
gcatgatcataggagactgcctcgttttgggtaatgattcatatggacacttcactataaataaacatcactagcctcatctacatttcaattcaatcat |
42095504 |
T |
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| Q |
423 |
catatagatttctttatctgaataatttagcaatgatgagatattgttttcttttgcttgtatcactt-ttattctcaacacttcattgtcatctg |
517 |
Q |
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| T |
42095503 |
catatagatttctttatctgaataatttagcaatgatgagatattgttttcttttgcttgtatcacttgttattctcaacacttcattgtcatctg |
42095408 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 30; Significance: 0.0000002; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 453 - 517
Target Start/End: Complemental strand, 39691784 - 39691719
Alignment:
| Q |
453 |
caatgatgagatattgttttcttttgcttgtatcactttta-ttctcaacacttcattgtcatctg |
517 |
Q |
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|||||||||||||| ||||| ||||| |||||||| | || |||||| ||||||||||||||||| |
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| T |
39691784 |
caatgatgagatatggttttgttttgattgtatcaatgctagttctcagcacttcattgtcatctg |
39691719 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 453 - 517
Target Start/End: Original strand, 39703737 - 39703802
Alignment:
| Q |
453 |
caatgatgagatattgttttcttttgcttgtatcactttta-ttctcaacacttcattgtcatctg |
517 |
Q |
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| T |
39703737 |
caatgatgagatatggttttgttttgattgtatcaatgctagttctcagcacttcattgtcatctg |
39703802 |
T |
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