View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17847_low_8 (Length: 442)
Name: NF17847_low_8
Description: NF17847
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17847_low_8 |
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Alignment Details
Target: chr2 (Bit Score: 389; Significance: 0; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 389; E-Value: 0
Query Start/End: Original strand, 1 - 433
Target Start/End: Complemental strand, 12268874 - 12268449
Alignment:
| Q |
1 |
attgttttacttgactaactaccataactcttctagctatttatcttttctgaatctggactaaaattctccagtttgtgatgttttagattttgcagat |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
12268874 |
attgttttacttgactaactaccataactcttctagctatttatcttttctgaatctggactaaaattctccagtttgtgatgttttagattttgcagat |
12268775 |
T |
|
| Q |
101 |
gactcacccaaaaagatatttgcattagacctttatttttt-atagcaaacgattctataaaataatttataatttattagtaataaatgaaaatattga |
199 |
Q |
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||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
12268774 |
gactcacccaaaaagatatttgcattagacctttatttttttatagcaaacgattctataaaataatttataatttattagtaataaatgaaaatattga |
12268675 |
T |
|
| Q |
200 |
tatggggggatgggtagccactactgcatttgtgacttttagtaacactcactcactcaccttgtaacatttgttaaattgttactgctatggtgatttt |
299 |
Q |
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|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
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| T |
12268674 |
tatggg--------tagccactactgcatttgtgacttttagtaacactcactcactcaccttgtaacatttgttaaattgttactgatatggtgatttt |
12268583 |
T |
|
| Q |
300 |
gtaacatttccaaaatgtgtttcatactttgtaagttgtaacaatctttttgttattagtgctttataattttccttttaaattacatttcaattttcta |
399 |
Q |
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||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
12268582 |
gtaacatttccaaaatgtgtttcatactttgtacgttgtaacaatctttttgttattagtgctttataattttccttttaaattacatttcaattttcta |
12268483 |
T |
|
| Q |
400 |
actctttaaatttctctcacttccaccttcttct |
433 |
Q |
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| T |
12268482 |
actctttaaatttctctcacttccaccttcttct |
12268449 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 142 - 255
Target Start/End: Complemental strand, 12270276 - 12270163
Alignment:
| Q |
142 |
atagcaaacgattctataaaataatttataatttattagtaataaatgaaaatattgatatggggggatgggtagccactactgcatttgtgacttttag |
241 |
Q |
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||||| ||||||||| |||| |||||||||||||||| |||||||||||||||| |||||||| ||| ||||||||||||| ||||| |||||||| | |
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| T |
12270276 |
atagccaacgattctttaaagtaatttataatttattgcaaataaatgaaaatatttatatggggtgattggtagccactactacatttatgactttttg |
12270177 |
T |
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| Q |
242 |
taacactcactcac |
255 |
Q |
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||||||| |||||| |
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| T |
12270176 |
taacacttactcac |
12270163 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 45; Significance: 2e-16; HSPs: 4)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 335 - 415
Target Start/End: Complemental strand, 17032100 - 17032022
Alignment:
| Q |
335 |
ttgtaacaatctttttgttattagtgctttataattttccttttaaattacatttcaattttctaactctttaaatttctc |
415 |
Q |
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||||||| |||||| |||||||||| |||||||||| ||||||||| |||||||||||||||||||| |||||||||||| |
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| T |
17032100 |
ttgtaactctcttttagttattagtg-tttataatttgccttttaaaatacatttcaattttctaact-tttaaatttctc |
17032022 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 335 - 415
Target Start/End: Complemental strand, 17562536 - 17562458
Alignment:
| Q |
335 |
ttgtaacaatctttttgttattagtgctttataattttccttttaaattacatttcaattttctaactctttaaatttctc |
415 |
Q |
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||||||| |||||| |||||||||| |||||||||| ||||||||| |||||||||||||||||||| |||||||||||| |
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| T |
17562536 |
ttgtaactctcttttagttattagtg-tttataatttgccttttaaaatacatttcaattttctaact-tttaaatttctc |
17562458 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 344 - 397
Target Start/End: Original strand, 17030575 - 17030627
Alignment:
| Q |
344 |
tctttttgttattagtgctttataattttccttttaaattacatttcaattttc |
397 |
Q |
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|||||| |||||||||| |||||||||||||||||||| ||||||||| ||||| |
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| T |
17030575 |
tcttttagttattagtg-tttataattttccttttaaaatacatttcagttttc |
17030627 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 344 - 397
Target Start/End: Original strand, 17561011 - 17561063
Alignment:
| Q |
344 |
tctttttgttattagtgctttataattttccttttaaattacatttcaattttc |
397 |
Q |
| |
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|||||| |||||||||| |||||||||||||||||||| ||||||||| ||||| |
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|
| T |
17561011 |
tcttttagttattagtg-tttataattttccttttaaaatacatttcagttttc |
17561063 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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